Ichthyobacterium seriolicida: JBKA6_0262
Help
Entry
JBKA6_0262 CDS
T05228
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JBKA6_0262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ise03400
]
JBKA6_0262
Enzymes [BR:
ise01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JBKA6_0262
DNA repair and recombination proteins [BR:
ise03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JBKA6_0262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
Med6
Motif
Other DBs
NCBI-ProteinID:
BAV94275
UniProt:
A0A1J1E8L7
LinkDB
All DBs
Position
346197..349349
Genome browser
AA seq
1050 aa
AA seq
DB search
MKDKESAAYCFNELEKLEEDCKVLFFSNSYNNLDETADRSISKTLFQTEAINTINKQNRP
FIVVSFTDAISEKLISKEEFIKDVFHLSVGDTISLDSLESKLEVFNFDRVDFVTTPGQFS
IRGSIFDIFSFSNENPYRIDFFDQTINSIRLFDESTQLSVQEVEGIDILKDISGKHKTAR
QNSSIFDYMPEDTVVITDDLQVILRDIKLIFDNSKEKNTNLEKLFLSDSEIVEELKKLSV
IEFSKPFFSVDNTVSFSCEPQPSFSKQFELLGNNLLNNTKEGIENIICCSGEKQASRLIE
IFESVNFRIKFSTIQYPIHRGFVDRGNKVACYSDHQIFDRYQRFYLKNNYNKRHSLTLKE
INSLKRGDLVTHIDYGIGRFGGLQKLENDGKRQEVIKLVYKDNDTLYISIHSLHKISKFN
SKEGTTPKLTRLGSGSWSKIKKKTKSKIKDIAFDLIKLYAERKQKKGFAFSPDTYLQQEL
EASFIYEETPDQITAIKVVKEDMERDIPMDRLICGDVGFGKTEIAIRAAFKAVADNKQVA
VLVPTTVLTFQHKNSFNKRLEDFPSNVECLNRFKTAKQKTEILNKLKKGEIDIIIGTHML
INAEFKDLGLLIIDEEQKFGVGVKDKLKNLKKNVDTLTLTATPIPRTLQFSLMGARDLST
LNTPPPNRQPIETQVITFDEQIIGDAISYEISRGGQVFFIHNRISDIKGIKSTIQNIVPE
AKIGIGHGQMDGKQLEELILSFMRGEFDILISTTIIENGLDIPNANTLIVNNANNFGLSD
LHQMRGRVGRSNKKAFCYFLAPPHISMSEESRKRLQILEEFSNLGSGFKIAAKDLEMRGA
GDILGGEQTGFINDIGFDTYQKILNETIEELKKKEFKNLYTEDTENNIFIASKECHIDTD
FEILFPSDYISNVDERLSLYEELSKMRHEEELNSFSKRIVDRFGDIPIETKGLLNSMRIK
WKAKKLGLEKIILKNQKMVGYFISDENSPFFKSETFNDILLFLQRNHHRSSMKELKSKSD
STVLTMSISGIKNIDEAFTVMEELECRSIN
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagataaagaatccgcagcctattgtttcaatgaattagagaaattagaagaggat
tgcaaagttctttttttttctaactcttacaataatctcgatgagacagctgataggagc
atctctaaaactctattccaaaccgaggcaataaacactataaataagcaaaacagacct
tttatcgtagtatcctttaccgatgctatctctgaaaagttaatcagcaaagaggagttt
attaaagacgtatttcacctttctgtaggcgacacaatatccttagattctttagagagt
aaactagaagtctttaattttgatagggtagattttgttactactcctgggcaattttct
attagaggaagtattttcgatatattttcattttctaatgaaaatccttataggattgat
ttttttgaccaaacgataaatagcattaggttatttgatgaatcaactcagctatcagta
caggaggtagagggtatagacatcttgaaagatatatctggtaaacacaaaacagctaga
caaaatagtagtattttcgattatatgcccgaagataccgtagtgataactgatgatcta
caggtgattttaagggatattaaattaatatttgataactcaaaagagaaaaacacaaat
cttgaaaaactatttttaagcgatagtgaaatagtcgaagaattaaaaaaattatctgta
atagagttttccaagccatttttctcagtggataatacagtatccttttcttgtgaacct
caaccttcttttagtaaacaattcgagttgttggggaataatcttctaaacaataccaaa
gaggggatagaaaatataatttgctgtagtggggaaaaacaagccagtagactcatagaa
atatttgaaagtgtgaattttcgtataaaattcagcacgatacaatatcctattcacaga
ggttttgtagatagaggtaataaagtggcttgttatagcgatcatcagatattcgatcgt
tatcaacgattctacttaaaaaacaactataacaaaagacattctctgacattaaaagag
ataaactccttaaagagaggagatttagtaacccacatagattacggtataggtagattt
ggaggattacagaaattagaaaatgacgggaaaagacaagaggtcataaagttagtatac
aaggataatgacactctatacataagtatccactctttacataaaatatctaaattcaac
tctaaagagggcactactcctaagttgactaggctaggatcgggaagttggagtaaaatc
aagaaaaagacaaagagcaagataaaagatattgcctttgatctaatcaaactatacgcc
gagagaaaacaaaaaaaaggatttgctttcagtccagatacatatttacaacaagaatta
gaagcttcttttatctatgaagaaactccagatcaaataacagctatcaaagttgttaaa
gaagatatggaacgagatattcctatggatagactaatatgtggagatgtgggttttgga
aaaactgaaatagctattcgtgctgcttttaaggcagtagccgataataaacaagtagct
gtattagtccctacaacggtattgacatttcaacacaagaactcttttaataagagatta
gaagactttccaagtaatgtagagtgtttaaatagatttaaaactgcaaagcagaaaaca
gagattttaaacaaattaaaaaaaggtgaaatagatataataataggcactcatatgttg
atcaatgcagagtttaaagatttaggtctattaattatagatgaagaacagaagttcgga
gtaggagtaaaagataaattgaaaaacttaaaaaagaatgtagataccttaactcttacg
gctacgcctattcctaggactttacaattttcgcttatgggggctagagatctatctaca
ttgaatactccacctccaaacaggcaacctatagaaactcaagtcatcacttttgacgag
cagatcataggagatgctatttcttatgaaatatctagaggagggcaggttttctttatt
cataatagaataagtgatattaaagggataaagagcactatacaaaatatagtgcctgag
gctaaaataggaataggtcatggtcagatggatggtaaacaactagaggaattaatacta
tcttttatgagaggagagtttgatattctaatatctaccactataatagaaaacggatta
gatataccaaatgctaatactctgatcgtaaataatgcgaataattttggtttgtccgat
ctgcatcagatgagaggaagagtgggtagatctaataagaaagctttttgttatttctta
gctcctcctcatatttctatgagcgaagaatctagaaagagattacagattttagaggag
ttttccaatttgggatctgggtttaaaatagctgctaaagatttggaaatgagaggagct
ggtgatattttaggaggggagcaaacaggttttataaacgatataggatttgatacatat
caaaagatattaaacgaaactatagaggaattaaagaaaaaagaatttaaaaatttatat
acagaggatactgaaaataacatatttattgcttctaaagaatgtcatatagacacagat
tttgaaatactatttccaagtgactatatcagtaatgtagatgaacggctatcactttat
gaagaattgagtaagatgagacatgaagaagaattgaattccttttcaaagagaatagtc
gacaggtttggagatattcctattgaaacaaaggggttattaaattccatgaggataaag
tggaaagccaaaaaattgggtttagagaaaataatattgaaaaaccagaagatggtaggt
tatttcatatcagatgaaaattcaccttttttcaagtctgaaactttcaatgacatatta
ctctttttacaaagaaatcaccatcgctcttctatgaaagagttaaaatctaaaagtgat
tcaactgttttgacaatgtctatatctggcataaaaaatatagatgaggccttcacagtt
atggaagaactagaatgtcgatctataaactag
DBGET
integrated database retrieval system
