Ipomoea triloba (trilobed morning glory): 115999178
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Entry
115999178 CDS
T07384
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
115999178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
itr03400
]
115999178
Enzymes [BR:
itr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
115999178
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
115999178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
115999178
NCBI-ProteinID:
XP_031094835
LinkDB
All DBs
Position
12:complement(127169..145955)
Genome browser
AA seq
1169 aa
AA seq
DB search
MAASNGGEDIKFSVVVSMFQWIHKSKSKPLKQSKFRKFLDTFCRKPHDYFAAMRLILPGL
DRDRGSYGLKEHVLATCIIDALGISRDSDDAHRLLNWRKAGPRAGLNAGNFSLVAAEVLQ
RRQGVSSGGLTIKELNDLLDALASSVNRSEKTTVLSDLIRRTNAQEMKWIVMIILKDLKL
GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKVVRPQLALRVSN
AAAAWKKLHGKEVVVECKFDGDRIQIHKNKAEMHFFSRNFFDHQEYAHAMSDIIAQNILV
EKCILDGEMLVWDTSANRFAEFGSNQEIAKAAREGLDSDRQLCYVAFDVLYVGDTSVIHQ
SLKERHELLRKVVKPIKGSLEILVPNGGLNAHRAPGELCWSVVGHGVDDVEKFFKATVEN
RDEGIVLKDLNSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRHGGKVAQFLV
GISERPSLGTYPRRFISFCRVGTGLSDEELDAVVTRLKPYFRKYEYPKQTPPSFYQVTNS
SKERPDVWVESPEKSIIVSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQT
FVELVHSSNGTTQRGAYSGRVKDHEPKHIKSKGRERKNALVVPSHFIQTDVSHIKGETSI
FLNMVFYFANVPSSHTLDSLHKMVVEHGGTFSMNLNNSVTHCIAAESRGIKFQAAKLRGD
VVNCSWLFDCCSQKRLLPLHPKYFLFLSDATKKKLQEEVDEFSDSYYSNLNIDDFKQLLS
SICRPEESKTVEYYKKKYCPKDKWCCFHYCSIHFFLHMHSLKSLDQKVLLELAMRRLKLE
VSMGGGKVSDDLFHATHLVIISLPEFCVDFDTLLRSFSVSEGHVMCSNKLHVVGSQWLED
CFEKNQKLPEGSYSLKPKNFEASAIKESESDFMIEDHMGKHVIPSSTAKNVGKEKEVALE
ESTVNMLLPKRDGKRKRRASGRSTSRGKATIIKRPRRTKFGSKPARIDENESSESDASRG
IRQNKFGGSDNEENFEFNRWNGENISNHGPEIPVEYVIEDSKPLVEGKEIVQECIDESGV
GGEWNASKTLSQNPLDPVQSILLNMIPSLEKTSSSTVVHENVGQKPSSSSTSMDMGLEQE
KPPPLDLTPNPIKKKKVSYKDAVAALLKD
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagcaatggtggcgaagacatcaagttcagcgtggtggtgagcatgttccag
tggatacacaagagcaaatccaagccgctaaaacagtccaagttccgaaagtttctggac
actttctgccggaagcctcatgactacttcgctgcaatgcggctcatcctccctggcctc
gaccgcgatcgcggctcctatggtctcaaagagcacgtgcttgccacctgcatcatcgac
gccctcggcatatcccgcgactccgacgacgcccaccgcctccttaactggcgcaaggct
ggccctagagctggcctcaatgccggaaatttctcccttgtagccgctgaggtcctacag
cgcaggcagggagtgtcttctggtgggctaacaataaaagaattaaatgacttgcttgat
gccttagcttcaagtgtgaacagatctgagaagactactgttctttctgacctcattagg
agaacaaatgctcaggaaatgaagtggattgttatgataattctcaaagatcttaagttg
ggaattagtgaaaaaagcatctttcatgaattccatccagatgcagaagacttgttcaat
gttacttgcgacttaaaacttgtctgtgaaaagttaagagatagaaatcaacgacataag
cgccaggatattgaagttggaaaagtggtgcgccctcaactagctcttagggtcagcaat
gcagctgctgcatggaagaagcttcatggaaaggaagtagttgttgagtgcaaatttgat
ggggatcgcatccagattcataaaaacaaagcagagatgcacttcttctctagaaacttt
tttgatcatcaagagtatgcacatgcaatgtcagatatcattgcacagaatattcttgtg
gagaaatgtatacttgatggtgaaatgttagtctgggacacatctgcaaatcgttttgca
gagttcggttcaaatcaagaaatagcaaaggctgcaagggaaggacttgatagtgacagg
cagttatgctatgttgcctttgatgttctttatgttggagataccagtgttattcaccag
agtttgaaagaacgacatgagcttctacgtaaggttgtgaagcctattaaaggtagcttg
gagattttggttcctaatggtggccttaatgctcatcgtgctcctggagagctatgctgg
tcagtcgttggtcatggtgtagatgatgtggagaagttttttaaagcaaccgttgaaaac
agagatgaaggaattgttctaaaagaccttaattcaaaatgggagcctggtgaccggagt
ggaaagtggctaaagttgaaacctgagtatattcgggctggctctgatttggatgttctt
atcattggaggttattatggatctggacgtcatggtgggaaggtggcacaatttttggtg
ggtatttcggagcgtccatctcttggcacatatccaagaagattcatttctttctgcaga
gtgggcacgggactctctgacgaagagcttgatgctgttgtgactagattaaaaccatat
ttcaggaaatatgaatacccaaagcagacaccacctagcttctatcaagtaacaaacagt
tcaaaagaaagaccagatgtctgggtggagagcccagaaaaatcaataattgtttctatc
accagtgatattcgaacaataagatctgaggtgtttgctgcaccatacagcttgagattt
ccacgtattgaccgggttagatatgacaagccttggcatgagtgtcttgatgtgcaaact
tttgttgaattggtacattcaagcaatggtaccactcaaagaggggcatactctggaagg
gtgaaggatcatgaaccaaagcatatcaagtctaagggccgtgagaggaagaatgcttta
gttgttccttctcatttcatacagacagatgtctctcatattaagggtgaaacatcaata
tttttaaacatggtattttactttgctaatgtgccttcatcacataccctggattccttg
cacaaaatggttgttgaacatgggggcactttctcaatgaatttgaataattcagtcact
cattgcattgcagctgaaagtagagggatcaagtttcaggctgcaaagcttcggggagat
gttgttaattgctcttggctctttgattgttgttcacaaaaaaggctccttcctctacat
ccaaagtacttccttttcctttctgatgcaacaaagaaaaagttacaagaagaagttgat
gagttctctgattcttactacagtaacctcaatattgatgattttaaacagctcttgagc
agcatatgtcgacctgaagagtctaaaactgttgaatactataagaagaaatattgtcca
aaggataaatggtgttgttttcattattgcagcattcactttttccttcatatgcactct
ttaaaaagtttggatcagaaggttttattggagcttgcaatgaggagattgaagcttgaa
gtttccatgggaggtggcaaagtttccgatgatcttttccatgctacccatctggttatc
atttcccttccagaattctgtgtggacttcgacacattgttgaggagcttttctgtatca
gaggggcatgttatgtgcagtaacaaactgcatgtagtggggtcacaatggttagaagat
tgttttgagaaaaaccagaagttgcctgagggtagttatagtctgaagcccaagaatttt
gaagcatctgccattaaagagagtgaaagtgacttcatgattgaagaccatatgggcaag
catgtcataccatcttcgacagctaaaaatgtgggaaaggaaaaagaagtggctttggag
gagtcaactgtcaacatgttgttgcctaagagggatggcaaaagaaaacggagagctagt
ggtagaagcacaagtagagggaaagcaaccatcatcaaacgtccacgaagaacaaagttt
ggaagcaaaccagctaggatagatgagaatgaatcaagtgaaagtgatgcttcacgggga
attaggcaaaataaatttggggggagtgataatgaagaaaactttgaattcaacagatgg
aatggtgaaaatataagcaaccatggtccagaaatcccagtggaatatgtaattgaagat
tcaaagccgctggtggaaggaaaagaaattgttcaagagtgtatagacgagagtggtgtt
ggaggagaatggaatgctagcaaaaccttatctcaaaaccctctcgatccagtccaatca
attttattgaatatgataccaagccttgagaagacatccagcagcacggttgtgcatgaa
aatgtcgggcagaaaccgagcagtagcagcaccagcatggatatgggtcttgagcaagaa
aagccaccaccactagatctcacaccaaatccaataaagaagaagaaagtgagctacaag
gatgcagtagctgcattgctcaaggattag
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