Ipomoea triloba (trilobed morning glory): 116006256
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Entry
116006256 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116006256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116006256
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116006256
Spliceosome [BR:
itr03041
]
Complex A
U2 snRNP components
U2 related factors
116006256
Complex B
116006256
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
116006256
NCBI-ProteinID:
XP_031102419
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All DBs
Position
15:complement(9610398..9619315)
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AA seq
1175 aa
AA seq
DB search
MEEPKQKSSKREDSEKEVEEPRRRSHRDRDEHRDRDKEKNGERHRERDREHYRDKKDRHD
REKSTDDKYRERNRDREREKHKDRHKEKEREKSSRDKVSKDREKDRSDRESAKEKEDRER
EREKEKEKDREREKEKEKDREREKEKERDRDREKEKEREREREKEREKEKERDKERERRE
RDRREKDREERERSREKRVREKERRRDYSSDDDDDDDVDVRDRERKRRRRENDHKSRDHE
RSKKPIKLKDDSEDGSPLRRSDEESSEKKQKNLEEEQAEEQRKLEEEMEKRRRRVQEWQE
LRRKKEESEREKLGVAAITDEPKSGKTWTLEGESDDEDAALEEKQGMDMDVDGLAKPLDV
DGVGPVSSNDVPDLKISQNGGNDASMDDDEIDPLDAFMNSMVLPEVEKLKNAEAPSEDIK
SGLKDNTVIYNEEKPKKGVKKAMGRIIPGEDSDSDYGEVENDEDPLEDEDDEEFMKRVKK
TKAEKLSIVDHSKIDYPSFRKNFYIEVREISRMTPEEVAAYRKQLELKLHGKDVPKPVKT
WHQTGLSTKILDTIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRH
IKDQPPLVPGDGPIGLVMAPTRELVQQIHSDIRKFAKVMGLSCVPVYGGSGVAQQISELK
RGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPD
RQTVLFSATFPRQVETLARKVLNKPVEVQVGGRSVVNKDITQLVEVRPESERFLRLLEIL
GEWYEKGKILIFVHTQEKCDALFKELLKHGYPCLSLHGAKDQTDRESTIMDFKSNVCNLL
IATSIAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPD
LVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKA
QAKEYGFEEDKSDSEDEDEGIRKAGADVSQQVAALAQAAALAAATKANVAQLPGSVQFPQ
LPPHGGVPGPLANILPGNGLLIAPNDMSATAAAFLAAKNLQQNLARLQNEVMPEHYEAEL
EINDFPQNARWKVTHKETLGPISEWTGAAITTRGYYIPPGKVPGPGERKLYLFIEGPTEQ
SVKRAKAELKRVLEDITMQATSLPGSAQPGRYSVV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaccaaagcagaagtcttctaagagggaggactctgaaaaggaagtagaagag
ccaaggaggaggagccaccgtgacagagatgagcaccgagaccgtgataaggagaagaat
ggagagaggcacagggaaagagacagggaacactaccgtgacaagaaagaccgccacgat
agggagaagagtactgatgataagtatagggagagaaatagagatagggaaagggaaaaa
cacaaggataggcataaagagaaagagcgggaaaagagcagcagggataaggtctctaaa
gacagagaaaaggataggtctgacagagagagtgctaaggagaaggaagacagagagagg
gagagagagaaagagaaggagaaggatcgcgaaagagagaaagagaaggagaaggatcgc
gaaagagagaaagagaaggagagggatcgagacagagagaaagagaaggagagggaacgc
gaaagagaaaaggagagagagaaagaaaaggagagggataaggaaagggagagaagagag
agagataggagagaaaaagatagggaggagagggaaaggagtagggagaagagggttcgt
gaaaaagagcgcaggcgtgattatagcagtgacgatgatgacgatgatgatgttgatgta
agagatcgtgaaagaaagaggcgaaggagagagaatgatcacaagagcagggatcatgag
cgaagcaagaaacctattaagctcaaagatgacagtgaagatggtagcccactgagaaga
agtgatgaagaatcatcagaaaagaaacagaagaatctagaagaagaacaagctgaggaa
caaaggaaactggaagaggagatggagaagcgaagaaggagagttcaggaatggcaggag
ttgagaagaaagaaggaggagtcagagagagaaaagcttggagttgcagcaattactgat
gaacccaagtcaggcaagacttggactttggaaggggaatctgatgatgaagatgctgct
ctggaggaaaaacaaggcatggatatggatgtggatggacttgctaagcctttggacgtg
gatggagttggccctgtaagttccaatgatgtacctgatttaaaaatttcacagaatggt
ggtaatgatgcttctatggatgatgatgaaatcgatccattggatgcattcatgaattct
atggtgttgcctgaagttgagaagcttaagaatgctgaggctccttctgaagatattaag
tctggtttgaaagataatactgttatttacaatgaagagaagcctaaaaaaggagttaaa
aaagctatgggaagaatcatacctggtgaagattctgattcagattatggtgaagttgaa
aatgatgaagatcctttggaggatgaagatgatgaagaatttatgaaacgggtgaagaag
accaaggctgagaaactatccatagttgaccactcaaaaattgattatccttctttccga
aagaatttttatattgaagttagggaaatttcaagaatgactcctgaagaggttgctgct
tacagaaagcaattggagttgaagttacacggaaaggatgttccaaagccagttaaaaca
tggcatcagactggattgtccactaagatcttggacacaataaagaaactgaattatgaa
aagccgatgccaatccaggctcaggcgttgccaataatcatgagtggtcgagattgcatt
ggtattgcaaagacgggttctggaaaaactctagcttttgtgttgccaatgttgagacat
attaaggatcagcctccacttgttcctggagatggtcctattgggcttgtaatggcccct
acaagagagcttgtgcagcaaatacatagtgatataagaaagtttgcaaaggttatgggc
cttagttgtgtgcctgtgtatggaggttcaggtgttgctcaacaaattagtgagttgaaa
cgaggagcagagattgttgtttgcactccgggtaggatgattgacatactttgtactagt
ggaggaaaaattacaaatctgcgaagagtcacttatttggtcatggatgaagctgatcgg
atgtttgatatgggctttgaacctcagatcactagaattgttcaaaatacacgtccggac
cgccaaactgtactgttttccgccacttttcctcgccaggttgagacattggcacgcaaa
gtgttgaacaaacctgttgaagttcaggtaggtggaaggagtgttgtgaacaaagatatt
acccaattagttgaggtgaggccagagagtgaaaggttccttagattactggaaatactt
ggagaatggtatgaaaaggggaaaattttgatatttgtccatacacaggagaaatgtgat
gctttgtttaaggaattgctaaagcatggttatccttgcctctcacttcacggggcaaaa
gatcagactgatcgtgagtccaccattatggattttaaaagtaatgtatgcaacttgttg
attgcaaccagtattgctgctagaggtttagatgtaaaggaacttgagctggtgataaac
tttgatgctccaaaccattatgaggactatgttcatcgtgttggacggactgggcgagct
ggtagaaaaggttgtgctatcacttttatatctgaggaggatgcaagatatgcacctgat
cttgtaaaagctttagaactgtctgaacaagttgttcctgatgacctgaaagcacttgct
gatagtttcatggcaaaagttaatcagggacttgaacaagctcatggaactggttatgga
ggtagtggctttaagtttaacgaagaggaagatgaagtgaggagagctgcaaagaaagca
caagcaaaagaatatggttttgaggaagacaaatcagattcagaggatgaagatgaagga
atcagaaaagcaggtgctgacgtctctcagcaggtggctgcccttgctcaggcagctgct
cttgctgctgctaccaaagcaaatgtcgctcaacttccgggttcagtccaatttcctcag
ctaccgcctcatggtggagtacctggtcctcttgccaatattcttccaggaaatggactg
ctaattgcccctaatgatatgtcagctactgcagcagcatttcttgctgccaagaatttg
cagcagaacttggctaggcttcagaatgaggtcatgcctgagcattatgaagcagaattg
gagataaatgattttccccaaaatgctcgttggaaggtgacacacaaagagacactaggt
cctatttcagaatggactggagctgccatcactactaggggttattatatcccacctgga
aaggtacctggacctggggaaagaaaattatacttgttcattgagggtcctacagaacaa
tctgtcaagagggcaaaagctgagctaaaacgtgttttggaggacataacaatgcaagca
acctcacttccgggttcagcccagccaggacgatactcggttgtttaa
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