Ipomoea triloba (trilobed morning glory): 116012812
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Entry
116012812 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
itr03009
]
116012812
03036 Chromosome and associated proteins [BR:
itr03036
]
116012812
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116012812
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
Pre-60S particles
Helicases
116012812
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116012812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
116012812
NCBI-ProteinID:
XP_031108345
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All DBs
Position
3:complement(13726729..13731241)
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AA seq
624 aa
AA seq
DB search
MNFKVDKKKKKTKFTEVVDNGVETEENPSSISNFRISDPLREALKVKGIEYLFPIQATTF
DIILDGSDLVGRARTGQGKTLAFILPILESLRNGPATATRKTGYGRAPSVLVLLPTRELA
LQVFADFEFYGGALGLTSCCLYGSSPYAPQQTKLKRGVDIVVGAPGRIKDLIQKGNIDLA
SLKFRVLDEVDEMLRIGFVEDVEFILGKVEDAGQVQTLLFSATLPDWVKHISAKFLKPDK
RTIDIVGNEKMKASTSVRHIIIPCSTSARSQLIPDIIRCYSSGGRTIIFTETKDYASELA
GSLPGARPLHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDIDVMLVIQCEPPRDVE
DYIHRSGRTGRAGNSGVAVMFYDPKKSNISKIEKESGVKFEHIAAPQPADIAKIVGKEAA
EEIAGISDSVIPAFKAAAENLLQTSHLSAAELLAKALAKASGYTEMKRRSLLTSMENYVT
LHLVSGRPVYSPSFVYNALKRFLHEAMAESIKGLTLTADGRGAVFDVSAEDVETFIAGAR
NEFDISLEVVKSLPQLQERDKSRGGRFGGGRGGGGGGGGFSDRRGGGGGRFSGGGGGGGG
RGGRGGFSDRQNDRIGRGKGRSKW
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaggtggacaagaagaagaagaagacgaaatttacggaggtggtggataat
ggtgttgagacggaggagaatccgagctccatttccaattttcggatttcggatcctctg
cgagaggctttgaaggttaagggaattgaatatctgttcccgatccaagctaccactttt
gatatcattttggatggttccgatttggttggtcgagctcgtactggtcagggtaaaacc
ttggcctttatcttgcctatcttggagtccttaaggaatggacctgccacagctactcga
aagactggttatgggagagctcctagtgttctggttctcttacccactagggaattggct
cttcaggtatttgctgactttgaattttacggtggggcattggggctgacgtcctgttgt
ttgtatggaagttctccctatgctccccagcaaactaaattgaaaagaggtgttgatatt
gtagtgggtgctcctggacgcatcaaggatctcatacagaaaggaaatattgatttggcc
tcattaaagtttcgtgttcttgatgaagttgatgaaatgctgagaattggttttgttgag
gatgtcgaatttattctagggaaggtagaggatgcaggacaagtccaaactcttctcttc
agtgccactttgccagattgggtgaaacatatctctgctaagtttctcaaaccagataag
agaaccatagacatcgttggcaatgagaaaatgaaggccagcactagtgtcagacatatt
attattccttgctctacttcagccagatctcagcttattcctgatatcattcggtgctat
agcagcggaggccgcactattattttcactgaaacaaaggattatgcttctgagcttgct
ggatcattgcctggtgctcggcctttacatggtgatatacaacaggcccaacgtgaggtt
acactttctgggttcagatcaggcaagttcatgaccttagtggcaacgaatgtggcagct
cggggattggacattgatgttatgttagtaatccagtgtgaacctccacgtgacgtagaa
gattatattcatcgatctggaaggacaggaagggcagggaatagtggcgttgctgtaatg
ttctatgatcctaaaaagtccaacatctcgaaaattgaaaaggaatctggtgtgaaattt
gagcacatagctgctccacagccagctgatattgcgaaaattgttggcaaagaagcagca
gaagaaattgccggaatctctgatagtgtcatacctgccttcaaggcagctgctgagaac
ctgctgcagacctctcatctctctgctgcagaattgcttgcaaaggcactggccaaagct
tctgggtatacagagatgaagaggcgctcacttcttacttccatggagaattatgttact
ctacatcttgtgagtgggaggcctgtctattcaccttcctttgtatataatgccttgaag
agattcttacacgaagcgatggctgaatcaatcaaaggccttactttgacagctgatgga
aggggggcggtttttgatgtgtctgccgaagacgtggaaacatttatagccggtgcaaga
aatgaatttgacataagcctggaggttgtaaaatcattgccacagttgcaagaaagagat
aagtcaagaggtggaagatttggaggtggtcgcggtggcggtggtggtggtggggggttt
tctgataggagaggcggcgggggaggtcgtttctctggcggtggcggaggcggaggcgga
agaggggggagagggggattttctgatcgacaaaatgacaggataggcagaggaaaaggg
cgcagcaaatggtga
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