Ipomoea triloba (trilobed morning glory): 116012820
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Entry
116012820 CDS
T07384
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
itr01009
]
116012820
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116012820
03041 Spliceosome [BR:
itr03041
]
116012820
Protein phosphatases and associated proteins [BR:
itr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116012820
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
116012820
Spliceosome [BR:
itr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
116012820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
Nup35_RRM
zf_CCCH_4
zf-CCCH
ThylakoidFormat
Motif
Other DBs
NCBI-GeneID:
116012820
NCBI-ProteinID:
XP_031108354
LinkDB
All DBs
Position
3:314263..321148
Genome browser
AA seq
919 aa
AA seq
DB search
MELKVSSLKPALSTSDSDSDPEEKEISEEDDDDRNHKHRRKGARSQSVEMDPYEPVLTRP
YRKHKPFENGHLYRESDSATFEKGQTTRFEKRRGMNSFSRAPQIANQRITPNLLSGDCRG
RGREPGVWFQRDLRFSSVDIVPQPIQQGSTAPSFFAGRGMPNASHAQSSSWAAFGMVPGV
PNTGLDILHPHGLQGTLMAPLNPSIGMGIPRQRCRDFEERGFCLRGDMCPMEHGVNRIVV
EDVQSLSQFNLPVSVPSAHLMGTVGGQGALPAVGPSGSLINCKALHKGGKPGMTEEGLGL
NGALVGSSLAGVADVYDPDQPLWTSDHHEKSAAVLGVNPPSVDETGDLVDVKCDHGRVGL
SDGNDIEHPIISSGAATESQGAMGRIGSSNNKAQVKEKIDFTVDALSHLDYEAKKGLDSS
SSIECAFRHGKHIDSENTDPHMTELSFKSQSNIGRNIKKSSQKAIRTLFVNGIPQKDNKR
EALFSHFQKFGEIIDIYIPLNSDRAFVQFSKREEAEAALKAPDAVMGNRFIKLWWAKRDR
ITENGVSTGNNTQRHAAGATPASVSSHVSVAYKGKESIQSAVHRSSVAAPPAPDNPKPVI
TNGPRALPPSQKKLESLEMLKEELRIKQEMLDQKRNEFRRQLDKLEKQGTVLKDEDQAAK
RQKTGTVAESIKVETLSFGEPDITVSSPESEAVPDSNSSANSAVLSCSNSASTMATPQPP
VSKPSFRPLAPLGAPFNFNRYKLDNRPTAFKINPPIPTALANVDVLKEHFSAFGELVSVE
LEDVEGQNDADSSKLSARISFASRLSAERAFLNGKSWQGHILQFKWQLPSSSNKVGGVKE
NALTSKDVGVEEETLTARLQSSDTSVHPPAKDGTTINADATGSGEIENTEKCENDQEDLN
VDEDSKSSSMLMSGEKQSE
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggagctcaaagtttcatctctgaagccagcactttcaacttctgatagtgacagtgat
cctgaagaaaaagaaatcagtgaagaggatgatgatgatcgtaatcataagcaccgtagg
aagggggcacgttcccaatctgttgagatggatccttatgaaccagttttgaccagacct
tacaggaaacacaagccctttgaaaatggacacctttaccgggaatctgattctgccact
tttgaaaaaggacagaccacgagattcgaaaaaagacgaggcatgaattcattttccaga
gccccacaaattgcaaaccaaagaataacaccgaacttactgtctggagactgtagaggt
cgaggaagggaaccaggtgtttggttccagcgtgatttgaggttcagctcagttgatatt
gtgcctcaaccgattcaacaaggctccactgcacctagttttttcgctggaagaggcatg
cctaatgcttcccatgcacaaagttcatcttgggcggcatttggaatggttcctggtgtc
cctaatactggtctggatatactgcatccccatggtttacaaggtacacttatggcaccg
ttgaacccctcaataggtatgggaataccccggcaaagatgtagagattttgaggagcgt
ggattttgcctaagaggagacatgtgcccgatggagcatggggtcaatcgaattgttgtt
gaagatgttcagagcctttctcagtttaatctccctgtatcggttccttctgcacacctg
atgggaacagttggtggacaaggagctctacctgcagttggtccttctggttcattgatc
aattgcaaagctctacataaaggtggcaagcctggaatgactgaggaaggattaggcttg
aatggtgcacttgtgggaagttctctggctggggtagctgatgtttatgatcctgatcag
cctttatggacaagtgatcatcatgagaaatcagctgcagtccttggagttaatccacca
agtgttgatgaaactggggatttggtggatgtgaaatgtgatcacggtcgggttgggctg
tctgatggcaatgatattgagcacccaattataagcagtggggctgctactgaatctcaa
ggtgctatgggaagaattggcagttcaaacaataaagcacaagtcaaggagaagattgat
ttcactgtagatgctttaagtcatcttgattatgaagcaaaaaaaggtctagattcatca
agtagcattgaatgtgcattccgtcatgggaaacatatagattctgaaaatactgaccca
cacatgacagaattgtcttttaagtcacaaagtaatattggacgcaatataaaaaaatct
tctcaaaaggcaattcgaactctctttgttaatggcatcccacaaaaggacaacaaaagg
gaagctcttttttctcattttcaaaaatttggagagataattgacatttatatcccactg
aatagtgatcgagcttttgtccaattttctaagagagaagaagctgaggcagctttaaag
gcgcctgatgctgtgatgggaaaccgttttatcaagctttggtgggctaaaagggaccgt
attacagaaaatggagtaagtactggcaataatacacaaagacatgctgctggggcgaca
ccagcttcagtttcatcccatgtctctgttgcttataaaggaaaagaaagtattcaatct
gcagttcacagaagttctgttgctgctccacctgcacctgataatcctaagcctgttatt
actaatggtccaagggccctgccaccttcgcaaaagaagctggaaagtttagaaatgtta
aaggaagaacttcgtataaagcaggagatgcttgatcaaaagcgtaatgagtttcggcgg
caattggataaacttgagaaacaaggtacagttctcaaagatgaagatcaggctgctaag
aggcaaaaaacaggaacagtagctgaatccataaaagtagaaactttgagcttcggtgaa
cctgatattactgtttcatcaccagaatctgaagcagtacctgatagcaacagctctgct
aatagtgctgttctctcatgttcgaactctgcttctaccatggcaacaccccaacctcca
gtctctaaaccatcattccgtccgttggcacctttgggggcacctttcaacttcaataga
tacaaactggacaaccgccctactgcattcaaaatcaacccacctattccaaccgctctg
gcaaacgttgatgttctgaaggaacacttctctgcttttggtgaacttgtgtctgtggaa
ctggaagatgtggaggggcaaaatgatgcggactcatccaaattatctgcacgaatatct
tttgcatcacgtctttctgctgaaagagcatttttgaatggcaaaagctggcaaggccat
attttgcagtttaagtggcagttgccctctagttctaacaaagttggtggtgtcaaagaa
aatgccttgactagcaaggatgttggagttgaagaggaaaccttgactgcccgtttacag
tcttcagatactagtgtccatcctcctgcaaaagatggcaccaccataaatgcggatgct
actgggagtggtgaaattgaaaacactgaaaaatgtgagaatgatcaagaggatttgaat
gttgatgaagattccaagtctagttccatgttgatgtctggtgagaaacaatcagagtga
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