KEGG   Ipomoea triloba (trilobed morning glory): 116016685
Entry
116016685         CDS       T07384                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03082  ATP-dependent chromatin remodeling
itr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    116016685
   03083 Polycomb repressive complex
    116016685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:itr03036]
    116016685
Enzymes [BR:itr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     116016685
Chromosome and associated proteins [BR:itr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     116016685
   HDAC complexes
    Sin3A-HDAC complex
     116016685
    BRAF-HDAC complex
     116016685
    REST complex
     116016685
    SHIP complex
     116016685
    MiDAC complex
     116016685
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     116016685
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    116016685
  Chromatin remodeling factors
   NuRD complex
    116016685
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 116016685
NCBI-ProteinID: XP_031112912
LinkDB
Position
4:34122318..34127420
AA seq 430 aa
MRSKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLAYGLHNKMEIYRPHKAYPIEL
AQFHTADYVEFLHRITPDTQHLFGSDLKRYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDVAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDIGERDGKFYAINVPFKDGIDDSSFIRLFRT
IISKVVETYIPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNIPLLVTGGGGY
TKENVARCWAYETGILLDSELPNEIPDNDYIKYFGPDYSLKIPGGHIENLNSKSYLGTIK
THVLENLRYIQHAPSVQMQEVPPDFYIPDFDEDTQNPDERLDQHTQDKQIQRDDEYYEGD
NDNDHSMDDA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacagaatctcctacttctacgatggggacgttgggaatgtctacttt
gggccaaaccatccgatgaaaccgcaccggctgtgtatgactcatcatctggttctagct
tacggtctccacaacaagatggaaatttataggcctcataaggcatatccaattgagttg
gcgcagttccatacagctgattacgttgaatttctgcaccggataacgcctgacactcaa
catttatttgggagtgacctcaaacgatataatcttggagaagattgccctgtatttgat
aacctgtttgagttttgccaaatttatgctggtggaacaatagatgctgcgcgtagatta
aacaatcaactctgtgacgtcgccataaattgggctggtggtttgcaccacgccaaaaag
tgtgaggcttcaggattttgttatatcaatgatctagttctgggaattttggagcttctc
aaatatcatccccgagttttgtatattgatattgatgtacatcatggagatggtgtggaa
gaggccttttattttacagatagggtaatgacggtcagtttccacaagtatggagataag
ttctttccaggaacaggggatatgaaggatataggagaaagagatgggaaattttatgcc
ataaatgtgccattcaaggatggaatagatgattccagtttcattcgtctcttccgaaca
attatttcaaaggtggttgaaacatatataccaggagcaatagttctccaatgtggggca
gattcactagctggtgatcgtttgggctgctttaacctctccattgatgggcatgctgaa
tgtgttcgatttgtgaagaaatttaatattcccctgctggtaactggaggaggggggtat
acaaaagaaaatgttgctagatgttgggcgtatgaaacagggattcttctagactcagag
cttcctaatgagatacctgataatgactacatcaaatattttggccctgattattcactg
aagattcctggtgggcacattgagaacttgaatagcaagtcataccttggcaccataaaa
acacatgtattagaaaatcttcgatacatccagcatgctcctagtgtgcagatgcaggag
gtgcctcctgacttctatattcctgattttgatgaagacacgcaaaatcctgatgagcgt
ttggatcagcatacacaagacaaacaaatccagcgagatgatgaatattatgaaggtgac
aatgacaatgatcactccatggatgatgcatga

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