Ipomoea triloba (trilobed morning glory): 116016685
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Entry
116016685 CDS
T07384
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03082
ATP-dependent chromatin remodeling
itr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116016685
03083 Polycomb repressive complex
116016685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
itr03036
]
116016685
Enzymes [BR:
itr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
116016685
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
116016685
HDAC complexes
Sin3A-HDAC complex
116016685
BRAF-HDAC complex
116016685
REST complex
116016685
SHIP complex
116016685
MiDAC complex
116016685
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
116016685
Heterochromatin formation proteins
Other heterochromatin formation proteins
116016685
Chromatin remodeling factors
NuRD complex
116016685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
116016685
NCBI-ProteinID:
XP_031112912
LinkDB
All DBs
Position
4:34122318..34127420
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AA seq
430 aa
AA seq
DB search
MRSKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLAYGLHNKMEIYRPHKAYPIEL
AQFHTADYVEFLHRITPDTQHLFGSDLKRYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDVAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDIGERDGKFYAINVPFKDGIDDSSFIRLFRT
IISKVVETYIPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNIPLLVTGGGGY
TKENVARCWAYETGILLDSELPNEIPDNDYIKYFGPDYSLKIPGGHIENLNSKSYLGTIK
THVLENLRYIQHAPSVQMQEVPPDFYIPDFDEDTQNPDERLDQHTQDKQIQRDDEYYEGD
NDNDHSMDDA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccaaggacagaatctcctacttctacgatggggacgttgggaatgtctacttt
gggccaaaccatccgatgaaaccgcaccggctgtgtatgactcatcatctggttctagct
tacggtctccacaacaagatggaaatttataggcctcataaggcatatccaattgagttg
gcgcagttccatacagctgattacgttgaatttctgcaccggataacgcctgacactcaa
catttatttgggagtgacctcaaacgatataatcttggagaagattgccctgtatttgat
aacctgtttgagttttgccaaatttatgctggtggaacaatagatgctgcgcgtagatta
aacaatcaactctgtgacgtcgccataaattgggctggtggtttgcaccacgccaaaaag
tgtgaggcttcaggattttgttatatcaatgatctagttctgggaattttggagcttctc
aaatatcatccccgagttttgtatattgatattgatgtacatcatggagatggtgtggaa
gaggccttttattttacagatagggtaatgacggtcagtttccacaagtatggagataag
ttctttccaggaacaggggatatgaaggatataggagaaagagatgggaaattttatgcc
ataaatgtgccattcaaggatggaatagatgattccagtttcattcgtctcttccgaaca
attatttcaaaggtggttgaaacatatataccaggagcaatagttctccaatgtggggca
gattcactagctggtgatcgtttgggctgctttaacctctccattgatgggcatgctgaa
tgtgttcgatttgtgaagaaatttaatattcccctgctggtaactggaggaggggggtat
acaaaagaaaatgttgctagatgttgggcgtatgaaacagggattcttctagactcagag
cttcctaatgagatacctgataatgactacatcaaatattttggccctgattattcactg
aagattcctggtgggcacattgagaacttgaatagcaagtcataccttggcaccataaaa
acacatgtattagaaaatcttcgatacatccagcatgctcctagtgtgcagatgcaggag
gtgcctcctgacttctatattcctgattttgatgaagacacgcaaaatcctgatgagcgt
ttggatcagcatacacaagacaaacaaatccagcgagatgatgaatattatgaaggtgac
aatgacaatgatcactccatggatgatgcatga
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