KEGG   Ipomoea triloba (trilobed morning glory): 116017009
Entry
116017009         CDS       T07384                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03030  DNA replication
itr03410  Base excision repair
itr03420  Nucleotide excision repair
itr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116017009
   03410 Base excision repair
    116017009
   03420 Nucleotide excision repair
    116017009
   03430 Mismatch repair
    116017009
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:itr03032]
    116017009
   03400 DNA repair and recombination proteins [BR:itr03400]
    116017009
Enzymes [BR:itr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     116017009
    6.5.1.6  DNA ligase (ATP or NAD+)
     116017009
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     116017009
DNA replication proteins [BR:itr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    116017009
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     116017009
DNA repair and recombination proteins [BR:itr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     116017009
   NER (nucleotide excision repair)
    Other NER factors
     116017009
   MMR (mismatch excision repair)
    Other MMR factors
     116017009
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 116017009
NCBI-ProteinID: XP_031113364
LinkDB
Position
4:complement(33801804..33810434)
AA seq 787 aa
MLSLRSCSCYFANTFIFFTRFHSHPTPNSIPFLLFAKPFSPKPLIISANPNLRSMSTRRS
AFDVLMANSKKKSKTQTPPAQESSPKKRKSAEKDTPEQKSSSVSAIPENDNSNAKAIENA
GSIDGPRNGGDSEEVAAKKPKLISPDESVAELKKKAANFDPKKAAYWGDGERVPFMFVAK
AFGAIEEESGRIAITDIVTNMLRTVIHTTPDDLLPAVYLSANKIAPAHEGLELGIGDASI
IKALAEACGAKEAHIKKQYKDLGDLGLVAKASRSSQSLMRKPEPLTVAKVFSTFRLIAKE
SGKDSQEKKKNYIKSLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLVALSHATVYSEKDS
SPPASVNSSIEEAEKIVKQVYSVIPVYDKIVPALLSGGVCNLQKTCSFSPGVPVGPMLAK
ATKGVSEIVDKFQDKEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAIS
RLKKPSTSSFVLDCELVAYDREKQKILPFQILSTRARKNVVVSDIKVNVCIYAFDILYLN
GQPLIQEQLSVRREHLYSSFEEEPGYFQFATSTTSNDLEEITQFLEAAVNGSCEGLIIKT
LSGDSTYEPSKRSHNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSN
NEEFQSICKIGTGFSETMLEERSASHRSKVIPQPKSYYRYAETLNPDVWFEPTEVWEVKA
ADLTISPVHRAAIGIVDPEKGISLRFPRLIRIREDKTPEQASTAEMVADMYSAQKHTQQN
NQDVDEE
NT seq 2364 nt   +upstreamnt  +downstreamnt
atgttatcactccgttcttgctcctgctacttcgccaacaccttcatcttcttcactcgc
ttccattctcaccctacacccaattcaattccatttctcctcttcgctaaacccttctct
cctaaacccctaatcatttccgcaaaccctaatctcagatcaatgtcgactcgccgctca
gcgttcgacgtcctaatggcgaattccaagaagaaatccaagactcagacacctccggcc
caagagtcttcgcccaagaaacgcaagagcgccgaaaaagacactccggaacagaaatct
agctccgtttcagctattcccgaaaatgacaattccaatgcgaaggcgattgagaatgcc
ggttctatagatgggccgaggaatggcggggatagcgaggaagtggcagctaagaaaccg
aagctgataagtcctgatgagagcgttgcggagctgaagaagaaggcggcgaattttgat
ccgaaaaaggcggcgtattggggagatggcgagagagtgccgttcatgtttgtggcgaag
gcgtttggtgcaattgaagaggagtctgggcggattgccatcactgacattgtgaccaat
atgttaaggaccgtgattcacaccacccctgacgacttgttgcctgcggtgtacctttct
gcaaacaaaattgcacctgcccatgagggattggaacttggaattggagatgcatcaatt
attaaggcccttgctgaggcttgtggggctaaagaagcacacattaaaaagcaatataag
gatcttggtgatttaggccttgttgcaaaagcaagtcgatcgtctcagtctttgatgcgt
aaaccagaaccattaactgttgccaaagtttttagtacatttcggcttatagctaaggaa
tctggcaaggatagtcaagaaaagaaaaagaattacatcaagtctctactagttgcagct
actgattgtgaacctcagtatttgatccgactactacagacaaagttacgcatcggtttg
gcagaacaaactcttttagtggcactgagccatgccacagtatactcagagaaggattct
tcaccccctgctagtgtgaattcatctatagaagaggctgagaagattgtaaaacaagtt
tactctgtgattcctgtatatgataaaattgttcctgctcttctttctggtggtgtctgt
aaccttcaaaagacatgctctttctcgcctggtgttccagttggacctatgctagctaag
gcaactaaaggagtatctgaaattgttgacaagtttcaagataaggagttcacttgtgaa
tacaagtatgatggtgagcgcgctcagattcattacttggaaaatgggtcagtggagata
tacagcagaaatgcagaacgtaatactggaaagtttcctgatgttgttgctgctatttct
agattaaaaaaaccttctacaagttcttttgttcttgactgtgaattagttgcatatgat
cgtgagaaacagaaaatcctgccttttcagatcctcagtacacgtgctcgtaaaaatgtt
gttgtgagtgacatcaaggtgaatgtttgcatctatgcctttgatatcttgtatcttaat
ggacaaccacttattcaagagcagctcagtgttcgtagagagcatctctatagttccttt
gaggaagaacctggctattttcaatttgccacgagtactacatcaaatgatcttgaggaa
ataacacaatttcttgaagctgctgttaatggcagttgtgagggattgatcatcaaaaca
ttgagtggagattcgacatatgagccttcaaaacgctcacataactggctaaaattgaaa
aaggattacatggaaagtattggagactccctcgatttggtaccaatagctgcttttcat
ggccgagggaaacgtactggtgtttatggagcttttctccttgcttgttatgatagtaac
aatgaggaatttcaaagcatttgtaaaatcggcactggtttttctgaaacaatgcttgaa
gaacgctctgccagtcatcgttctaaagttatcccccagccaaagtcatattacaggtat
gcagaaacactcaatccagatgtatggtttgaacccactgaggtttgggaggtgaaagct
gcagaccttacgattagccctgtgcaccgtgctgccattggtattgtggatcctgaaaag
ggaatttctctgcgatttcctcgcttgattcgtattcgagaagacaagactccagaacag
gcctcaacagcagagatggttgcagatatgtattctgctcagaaacacactcaacaaaat
aatcaggatgtagatgaagagtga

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