Ipomoea triloba (trilobed morning glory): 116025343
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Entry
116025343 CDS
T07384
Name
(RefSeq) probable RNA-dependent RNA polymerase 1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
itr03036
]
116025343
Enzymes [BR:
itr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
116025343
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
116025343
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RdRP
Motif
Other DBs
NCBI-GeneID:
116025343
NCBI-ProteinID:
XP_031122406
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All DBs
Position
7:complement(4495387..4501026)
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AA seq
1110 aa
AA seq
DB search
MGKTVQVSGFPDLVTAEEAKTCIERHTGAGSVCALEVKMCRNGQRSYAKVQFRNNRSVDQ
IISLATHRRLYFGTSYLRAFEMDTRIVQDRSYTHEMENLTLYFGCQTSEKRFYSIWGGGI
VSIKFGYGLKKMHLFLSYQSTEYKLQLSYEHIWEIKLYRPHRRNVKFLVIQLFAGPRIYK
KAEGSIYNFYADTPDEQWVRTTDFTRNCIGQSSSLCLEIPAGVTLPKFHDHFVYYSETDW
QLSVVFGLPFSHNLDLVPILRSPQEVNLPFKVLFKICSLVQQGCLPGPALNTNFFRLVDP
RTINIGCVEYALEKMLSLKKCCYDPVRWLTEQYEQYHKFKQPPKSAAISLDNGLVYVRRV
LLTPTRVYFSGPEVNQSNRVLRHYSDDIDNFLRVSFVDEDWEQIHSIDLSRRASSPSVIS
KTDIYDRILKVLKDGIVIGDKRFEFLAFSSSQLKENSVWMFASRVGLSAADIRAWMGDFR
KIKNVAKYAARLGQSFGSSRETLSVARHEIEMIPDIKIQRQGTEYNFSDGIGKISADFAQ
RVALKCGLEDFAPSAFQIRYGGFKGVVAIDPSSSKKLSLRSSMLKYESDNIKLDVLGWSK
YQPCYLNRQLVTLLSTLGVRDEVFERKQSEEVAQLNAILTDPLKAYEALELMAPGENTSI
LKEMLTCGYKPDVEPFLSMMLQTFRASKLHDLRTKTRIFVPKARWMMGCLDETRTLNYGE
VFVQYSGAGQRQLPVGPQFYESRDYNYIVRGKVVVAKNPCLHPGDVRVLRAVNVPALHHM
VDCVVFPQKGERPHPNECSGSDLDGDVYFVCWDQELIPRSMELPMDYTPAPSMDVYHDVT
IEEVQKYFVDYILNDNLGIISNAHVVFADKESLKAKSKPCLQLAQLSSIAVDFAKTGVPA
EIPSQLRVKEYPDFMEKPPEMVTYVSKRVLGKLFREVKDIAPEVSSIKSFTPEIARRSYD
PDLEVDGFEEYIDEAFYHKTEYDFKLGNLMDYYGIKTEAEVLSGGAIRASKFFDRRRDAD
AVSFAMKSLRKEVRAWFKVGSEYDDQFAKASAWYYVTYHHTYWGSYNEGMNRPHFISFPW
CVYDKLILIKKGKLNIAKALGGLTLEKSLA
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagacagttcaggtgtctgggttccctgatctcgtgactgcagaagaagctaaa
acttgcatagagaggcatactggagcaggctctgtatgtgccttagaggttaaaatgtgc
agaaatggacaacgatcatatgcgaaagtgcaatttcgtaacaatagaagcgtggatcag
attataagtttggccactcacaggaggttgtattttggcacctcgtatttgagggctttt
gaaatggacacccgtattgtgcaagatagatcgtacacccatgagatggagaatctaact
ctgtactttggatgtcaaacatcagagaagcggttttactcaatatggggagggggtatt
gtctcaataaaattcggatatggattgaaaaaaatgcacctctttctatcctaccaatct
actgaatacaagcttcaactttcatatgaacacatttgggagatcaagctgtatcgtccc
catcgtagaaatgtgaaattccttgttatacagttatttgctggtccacggatctacaag
aaagcagaaggctccatttataacttctatgcggatactccagatgagcaatgggtgagg
acaacagattttacgcgaaattgcattggacaatcttcgagtttgtgtttggagattcct
gcaggtgtcacactaccaaaattccatgatcattttgtgtactacagcgaaactgattgg
caactcagtgtagtgtttggtctcccgttttctcacaatctggatctagttccaattctg
cgttctccacaggaagttaacttgcctttcaaagtattgtttaagatctgttctttggtg
caacaaggatgccttcctgggccagcactcaatacaaattttttccgcttagttgatcca
cgtacaataaacattggatgcgttgagtatgccttggagaaaatgttatctttaaagaaa
tgctgttatgatcctgtacgttggttgactgagcaatatgagcagtatcacaagttcaag
cagcctccaaaatctgctgctattagtctggataatggcttggtatatgtacgcagagtc
ctacttactccaacgagagtgtatttcagtggtcctgaggtaaaccaatccaatcgtgtg
ttgcgccattattctgatgatattgataattttcttcgtgtatcgtttgttgatgaggat
tgggaacaaatacattctatagatttatctcgccgtgcatcttcccctagtgttatcagc
aagacagacatttatgacaggattctaaaggtactcaaagatggcattgttattggggat
aagagattcgaatttcttgcattctcctcaagccagttgaaggagaattctgtgtggatg
tttgcgtcaagagttggacttagtgctgctgatataagagcatggatgggagactttaga
aagattaaaaatgtcgcaaagtatgctgcgagacttggccaatcttttggttcatcccgg
gaaacgttgagtgttgccaggcatgagattgaaatgattcccgacataaagattcaaaga
caaggaacagaatataatttttctgatgggatcgggaaaatatctgcagactttgctcaa
agagttgctctaaaatgtggccttgaggatttcgctccatctgcttttcaaatccgttat
ggtggatttaagggcgtcgttgctatcgatccttcttcatcaaaaaagttgtcattgaga
agtagcatgttgaaatatgaatcagacaacataaagctagatgttttggggtggagcaaa
tatcagccctgttatcttaatcgccaactagtcacactcttgtctacactcggtgtcaga
gatgaggtctttgagaggaagcaaagtgaagaagttgctcaacttaatgctatcctcacc
gatcctctaaaggcatacgaggctcttgagttgatggctccgggagaaaacactagcatt
cttaaagagatgctcacgtgtggttacaagcctgatgttgaaccatttctctcaatgatg
ttacaaacattcagagcatcaaagttgcacgatttgaggactaagacaaggatatttgtc
cccaaagcgagatggatgatgggatgcctagatgaaaccagaacattgaactacggtgaa
gtgtttgttcaatattccggtgctggacagagacaacttcctgttggtcctcaattctat
gaatccagagactacaattacattgtccggggaaaggtggtcgttgcaaagaacccatgc
ttgcatcctggtgatgttcgtgttttgagggctgttaatgtgcctgctttgcaccatatg
gtagactgtgttgttttcccccaaaagggcgagagacctcatccaaatgaatgttcggga
agtgatttggatggtgatgtttactttgtttgttgggaccaagaattgataccaaggtca
atggaattgccaatggattatacccctgctccaagcatggacgtataccatgatgttacg
attgaggaagttcagaagtattttgtggactacattctgaatgacaatttaggcattatt
tcaaatgcccatgttgtattcgcagataaagaatcgttaaaggcaaagagtaaaccgtgt
ctacaacttgcacagctctcctctattgctgtagactttgcaaagacaggtgttcctgct
gagataccttcgcaattacgagtcaaagaatatccagattttatggaaaagccacctgag
atggtaacctatgtttcaaaacgagtacttgggaagctatttagggaggtgaaggatatt
gctcccgaggtaagctctataaagtcgtttactccagagatagcaaggaggtcatatgat
cccgacttggaggttgatgggttcgaagaatacattgatgaagctttctatcacaaaacc
gagtacgacttcaaattgggtaatcttatggactactatggcataaaaaccgaggctgaa
gtactcagtggcggggccataagggcatcgaaattctttgaccgtagaagggatgcagac
gcggttagttttgccatgaagtctttgaggaaggaagtgagggcatggttcaaggtaggt
agcgagtacgatgatcaattcgcaaaagcgtcagcttggtactatgtaacgtatcaccat
acttattggggttcctacaacgaggggatgaaccgtcctcactttatcagtttcccgtgg
tgtgtctacgacaagctgattctgatcaagaagggcaaactaaacattgcaaaggctctt
ggaggcttgactcttgagaagagcttggcctga
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integrated database retrieval system
