Ipomoea triloba (trilobed morning glory): 116030266
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Entry
116030266 CDS
T07384
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03013
Nucleocytoplasmic transport
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116030266
09122 Translation
03013 Nucleocytoplasmic transport
116030266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116030266
03041 Spliceosome [BR:
itr03041
]
116030266
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116030266
Spliceosome [BR:
itr03041
]
Complex C
Other components
EJC/TREX
116030266
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116030266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Haemadin
Motif
Other DBs
NCBI-GeneID:
116030266
NCBI-ProteinID:
XP_031128320
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All DBs
Position
9:11621755..11630253
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AA seq
621 aa
AA seq
DB search
MDLFRKAILHPGSPEEFALQTVQEAIKPQRQTKLVQDENQLLENILRSLLQELVSAAVQS
GQKIMQYGQSIDDGESSQGQIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMKNCED
IFGYIESKQDILGKAELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKEAPEGISIDFNFYKTFWSLQECFCNPPSLSLAPAKWHKFT
SSLMVVLNTFEAQPISDEEGNANYLEDEAAAFNIKYLTSSKLMGLELKDPSFRRHILVQC
LILFDYLKAPGKSDKELPSEAMKEEIKTCEERVKKLLEITPPKGKEFLRSIEHILQRERN
WVWWKRDGCPPFEKQQIEKKLAQGGQKKRRQRWRLGNKELSQLWKWADQNPNALTDPQRV
RTPAISDYWKPLAEDMDESAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSRFTEHGIEG
VVPVELLPPEVRSKYQGKPSDRSKRAKEETKTSVQQAEENQVATPASEVGIEGGKADLET
SATPMDTDATGNISQSGTPTPDENQKQSSDTDVGQEAGQIEADAETPQIEADVEAEAEAE
AEAGTVDGEPGDTEADLDAVG
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggatttatttaggaaggccattctacacccgggatcccccgaagaattcgctctccag
actgtgcaagaagctatcaaacctcagaggcaaacaaaattagtccaggatgagaatcag
ctactggagaatattttgagatctctactccaagaattggtgtctgctgctgttcagtca
gggcagaaaatcatgcagtatgggcagtcaattgatgatggtgaaagcagtcagggtcaa
attccacgacttcttgacattgtgctgtatctttgtgagaaagaacatattgaaggtggt
atgatatttcagcttttggaagatttgacagaaatgtccaccatgaaaaattgtgaagat
atatttgggtacattgaaagtaaacaagatatattggggaaggcagaactatttgcacga
ggaaaacttgtgatgttaaggacatgcaatcaacttcttcgtcggctgtcaaaggcaaat
gatgttgtgttctgtggaagaatcatcatgtttcttgctcacttttttccactatctgaa
cgctctgctgttaatataaagggagtattcaatacatcaaatgagacaaagtatgagaag
gaagctcctgaaggtatttcaattgatttcaacttctacaaaaccttttggagtttacag
gagtgcttttgcaacccaccgtctctatctcttgcccctgccaagtggcataaatttact
tccagtttaatggtggttctaaatacatttgaggctcagcctataagtgatgaagaggga
aatgcaaattaccttgaggatgaggcagctgcattcaacataaaatatcttacaagcagt
aaactaatggggcttgagttgaaggatcccagtttccgacgtcacattctagttcagtgc
ctcattttatttgattatctcaaggccccaggaaaaagtgataaagaattgccatctgaa
gccatgaaggaagaaataaagacttgtgaagagcgggtgaaaaagctacttgaaattact
ccacctaaaggaaaagaatttctccggtctattgagcatatattacagcgtgaaaggaat
tgggtttggtggaaacgtgatggttgccctccatttgaaaagcaacagattgaaaagaag
ctagctcaaggtggacaaaagaaacgtcgacaacggtggaggcttggaaataaagaactc
tctcagttatggaagtgggctgatcagaatccgaatgctttaactgatcctcaacgcgtg
cgcactcctgccatctcagactactggaagcccttggctgaagatatggacgaatctgct
ggaattgaagcagaatatcatcacaaaaataatcgggtttactgttggaaaggtctccgg
ttttctgctaggcaggatttggaaggattttctcgatttacggaacatggtattgagggt
gttgtgcctgtggaacttttgcctccagaggtgcggtcaaaatatcaaggtaaaccaagt
gataggtccaagcgtgccaaggaggaaacaaaaacatcagtgcaacaagcagaagaaaat
caggtcgcaacacctgctagtgaggtaggcatcgaaggcggcaaggctgaccttgaaacc
tctgctactccaatggacacagatgctaccgggaacatttcccaaagtggaactccaaca
ccagacgaaaatcagaagcaaagttccgacacagatgttggtcaggaagcagggcagata
gaagctgatgcagaaacaccgcagattgaagcagatgtagaagcagaagcagaagcagag
gcagaagcaggaaccgtcgatggagaaccaggtgacaccgaggctgatttagatgcagtt
ggctga
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