Isoptericola variabilis: Isova_2499
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Entry
Isova_2499 CDS
T01520
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
iva
Isoptericola variabilis
Pathway
iva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Isova_2499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_2499
Enzymes [BR:
iva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Isova_2499
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Isova_2499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AroM
AAA_22
CbiX
Motif
Other DBs
NCBI-ProteinID:
AEG45209
UniProt:
F6FSP7
LinkDB
All DBs
Position
complement(2731912..2735544)
Genome browser
AA seq
1210 aa
AA seq
DB search
MNLTGLIPALLADPGAAEAVERVPARGFVDVVTPVGVRPPLLAAAAERRPLVVVTATGRE
ADELAASVRAYLPDERSDDVAVLPAWETLPHERLSPRADTVAKRLAVFRRLAHPSEEGGQ
SGPIRVLVMPVRALLQPVVDGLGELEPVELHPGDTVDLTDVADRLVAAAYSRVDMVERRG
EFAVRGGILDVFPPTEDHPLRIEFWGDEVTEIRWFAVADQRSLEIAQHGLWAPPCREILL
TDAVRRRAAELVEQLPGAVEMLDKLAAGVAVEGMESLAPVLVDRMVPVLELAPDDALLVV
HEPERVRRRAHDLVATTEEFLAAAWTGAVAGGAAPIDLSAASFATFAEVRDVAARRGLGW
WTMSAFSLDAAPDGAAPGESAGADDVGGPVVESDGVTTITVGARDVESYRGDLARALDDV
KALQRGGWRLVLTTEGPGPAKRMVEQLSAADTAARLVTALESEPEGGVVLVAPALVGKGF
VAPELRLAVFSESDLTGRQGSTTRDMRKMPSRRRNVVDPLQLKAGDYVVHEQHGVGRFVE
MVQRTLGAGANAATREYLVIEYASSKRGQPGDRLFVPMDQLDQVTKYTGGEAPSLNKMGG
ADWKNTKAKARKHVRQIASELIRLYSARMATQGHAFSPDTPWQRELEDAFAYVETPDQLA
TIEEVKADMEKPVPMDRLVCGDVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVQQHFD
TFSERYAGFPVTVRALSRFQSEKESAETIQGLKDGTVDVVIGTHRLITGSVQFKDLGLVI
IDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVL
TYVGAYDEKQITAAVRRELLREGQVFYVHNKVETIERTAARLRELVPEARVGVAHGKMSE
SQLDQVIRAFWEKELDVLVCTTIVETGLDISNANTLVVERADMLGLSQLHQLRGRVGRGR
ERAYAYFLYPPERPLTETAHDRLATMAANTDLGAGMQIAMKDLEIRGAGNLLGGEQSGHI
AGVGFDLYVRMVGEAVQAFRGEAEEEAPEVTIELPVDAHLPESYIATERLRLEAYKKIAA
AHDAQALAEVRAELEDRYGALPEVAAALFDVADFRNHARRAGLSDVTAQGKYVRFAPVDL
PESAQLRLKRLYPGTVLKPAIRAILVPFPTTARIGGRPLRGAEVLTWARELVDAVILGEV
GAAAAVGTAR
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcaccggtctcatccccgccctgctcgccgaccccggcgccgccgaggcggtc
gagcgcgtccccgcgcgcgggttcgtcgacgtcgtgaccccggtgggcgtgcgcccgccg
ctcctcgccgcggccgccgagcgccggccgctcgtcgtcgtcacggcgaccgggcgcgag
gcggacgagctcgccgcgtccgtgcgcgcgtacctgcccgacgagcggtccgacgacgtc
gcggtgctgccagcctgggagacgctgccgcacgagcggctctcgccccgcgccgacacg
gtcgccaagcgcctcgccgtgttccgccgtctggcgcacccgagcgaggagggcgggcag
tccgggccgatccgcgtcctcgtcatgcccgtgcgcgccctcctgcagcccgtggtcgac
ggcctcggcgagctcgagcccgtcgagctgcaccccggcgacaccgtcgacctcaccgac
gtcgcggaccggctcgtggccgccgcgtactcgcgcgtcgacatggtcgagcgccgcggc
gagttcgccgtccgcggcggcatcctcgacgtgttcccgcccaccgaggaccacccgctg
cgcatcgagttctggggcgacgaggtcaccgagatccgctggttcgccgtcgccgaccag
cgctcgctcgagatcgcgcagcacggcctgtgggcgccgccgtgccgggagatcctgctg
accgacgccgtgcgccggcgtgccgcggagctcgtcgagcagctgcccggcgccgtggag
atgctcgacaagctcgccgccggcgtcgcggtcgagggcatggagtcgctcgcgcccgtg
ctggtcgaccgcatggtccccgtgctcgagctggcgcccgacgacgcgctgctcgtggtc
cacgagcccgagcgggtccgccggcgcgcccacgacctcgtggcgaccacggaggagttc
ctcgccgccgcctggaccggtgcggtcgccggcggagcggcaccgatcgacctgtcggcg
gcgtcgttcgccacgttcgccgaggtgcgcgacgtcgctgctcggcgcgggctcggctgg
tggacgatgtcggcgttcagcctcgacgccgcacccgacggcgccgcacccggcgagagc
gccggcgcggacgacgtcgggggaccggtcgtcgagtccgacggcgtcacgaccatcacg
gtcggcgcccgcgacgtcgagtcgtaccgcggcgacctggcccgggcgctcgacgacgtc
aaggcgctgcagcgcggtggctggcgcctcgtgctcacgaccgagggtcccggcccggcc
aagcgcatggtcgagcagctctcggccgccgacaccgcggcccggctcgtcacggccctc
gagtccgagccggagggcggcgtcgtgctcgtcgcgccggcgctcgtgggcaagggcttc
gtcgcacccgagctgcgcctcgcggtgttcagcgagtccgacctcacgggccgccagggc
tcgacgacgcgcgacatgcgcaagatgccctcgcgccggcgcaacgtcgtcgacccgctg
cagctcaaggcgggcgactacgtcgtgcacgagcagcacggcgtcgggcgcttcgtcgag
atggtgcagcgcacgttgggcgcgggggccaacgcggcgacgcgcgagtacctcgtcatc
gagtacgcgtcgtcgaagcgcggccagccgggcgaccggctcttcgtgccgatggaccag
ctcgaccaggtcacgaagtacaccggcggcgaggcgcccagcctcaacaagatgggcggc
gccgactggaagaacaccaaggcgaaggcgcgcaagcacgtccgtcagatcgcctcggag
ctcatccgcctctacagcgcccgcatggccacccagggccatgccttcagcccggacacg
ccgtggcagcgcgagctcgaggacgccttcgcctacgtcgagacgccggaccagctcgcg
acgatcgaggaggtcaaggccgacatggagaagccggtccccatggaccggctcgtgtgc
ggcgacgtcggctacggcaagacggagatcgcgatccgggcggcgttcaaggcggtccag
gacggcaagcaggtcgccgtgctcgtcccgacgacgctgctcgtgcagcagcacttcgac
accttctcggagcggtacgcgggcttcccggtgaccgtgcgggccctcagccggttccag
tcggagaaggagtcggccgagacgatccagggcctcaaggacggcacggtcgacgtcgtc
atcggcacgcaccgcctcatcacgggctcggtccagttcaaggacctggggctggtcatc
atcgacgaggagcagcgcttcggcgtcgagcacaaggagacgctcaagcagctgcggacc
aacgtcgacgtcctcgcgatgtcggcgacgccgatcccgcgcacgctcgagatggcggtc
accggcatccgcgagatgtcgacgctcgcgaccccgcccgaggagcgccacccggtcctc
acgtacgtcggcgcgtacgacgagaagcagatcacggcggccgtgcggcgcgagctgctc
cgcgagggccaggtgttctacgtgcacaacaaggtcgagacgatcgagcggaccgccgcg
cggctgcgcgagctcgtgcccgaggcgagggtcggcgtcgcgcacggcaagatgagcgag
agccagctcgaccaggtcatccgcgcgttctgggagaaggagctcgacgtcctcgtctgc
acgacgatcgtcgagacgggcctcgacatctccaacgccaacacgctcgtcgtcgagcgc
gccgacatgctcggcctctcgcagctccaccagctgcgcgggcgcgtcgggcgcggtcgc
gagcgcgcgtacgcgtacttcctctacccgccggagcgtcccctcacggagacggcgcac
gaccggctcgccaccatggccgccaacaccgacctcggcgccggcatgcagatcgcgatg
aaggacctcgagatccgcggcgccggcaacctgctcggcggcgagcagtcgggtcacatc
gcgggcgtcgggttcgacctctacgtgcgcatggtcggcgaggccgtccaggcgttccgt
ggcgaggccgaggaggaggcgcccgaggtcacgatcgagctgccggtcgacgcgcacctg
cccgagtcgtacatcgcgaccgagcggctgcgcctcgaggcgtacaagaagatcgcggcc
gcgcacgacgcccaggcgctcgccgaggtgcgcgcagagctcgaggaccgctacggcgcg
ctgcccgaggtggccgcggcgctgttcgacgtcgccgacttccgcaaccacgcgcgccgt
gccggcctgagcgacgtgaccgcgcagggcaagtacgtgcggttcgcgcccgtggacctg
cccgagtccgcgcagctgcggctcaagcggctctacccgggcacggtgctcaagcccgcg
atccgcgcgatcctcgtgcccttcccgacgacggcgcgcatcggcgggcggccgctgcgg
ggtgccgaggtgctcacgtgggcgcgcgagctcgtcgacgccgtcatcctgggggaggtg
ggtgccgcggccgccgtcggcacggcgaggtag
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