Janthinobacterium agaricidamnosum: GJA_2148
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Entry
GJA_2148 CDS
T03157
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GJA_2148 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jag03400
]
GJA_2148 (mfd)
Enzymes [BR:
jag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GJA_2148 (mfd)
DNA repair and recombination proteins [BR:
jag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GJA_2148 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
SNF2-rel_dom
ERCC3_RAD25_C
DUF4217
Motif
Other DBs
NCBI-ProteinID:
CDG82783
UniProt:
W0V602
LinkDB
All DBs
Position
complement(2332827..2336270)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSFDLKKSFPKAGSRFVLPALYGSSDAHALAAAALELKSQGRMLAVIVASASDGQRLLDE
IPWFAAGALRCHLLPDWETLPYDAFSPHQDLVSERLATLHEVQNRHCDVLIVPATTALVR
LAPPSFLAAYTFFFKKGEKLDEARLKSQLTLAGYTHVSQVMSPGEYSVRGGLLDLFPMGS
ALPYRLDLFGDTIDTIRTFDADTQRSLYPVNQVRLLPGREFPMDEAARTTFRSRWREQFE
GDPSRSVVYKDISSGIASAGIEYYLPLFFDDTATLFDYLPQDAALALVGDIDQAIRRFWV
DTQSRYRFLKADRERPILAPEALFLSDEHFFALAKPFGRWAIAKDDQGMTSELSAPVPNI
AVNRRADDPLANLRGYLLQPGRRVMICAESNGRRETLQQYFTEYQLDLAPVEGYEGFAHA
DARLMLGVAPLHAGFELFTPDGNLVFITETELYAGSGRRAGKKKQEGATQVESMVRDLSE
LKIGDPVVHINHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGAS
PEDAPLHSLGSGQWEKAKKKAADQVRDTAAELLNLYARRALRKGHSFDYSAHDYERFADS
FGFDETPDQAEAINNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILA
PTTLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAFKGMADGTLDIVIGTHKLLSD
DVKFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSII
ATAPQKRLAIKTFVRSENESIIREACLRELKRGGQIYFLHNEVETIQNRMAMLTELLPEA
RIAVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG
EVLGDNQSGEMHEIGFQLYSDMLNEAVRSLKNGKEPDLAAPLSSTTEINLHTPALLPADF
CGDVHERLSIYKRLANCASQDRIDDIQEELIDRFGKLPDAVKALVETHRLRIAANTVGIV
KIDAHGEAATLQFMPKPPIDPMRIIELIQKNRHIKLHGQDKLKITASMPDLAARVTQIKS
AIRQLTA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgacttaaaaaaatcgtttcccaaagccggcagccggtttgtcctgccggcg
ctgtacggctcgtccgacgcccatgcgctggcggccgccgcgcttgaactgaaatcgcag
ggccggatgctggccgtgatcgtcgccagcgccagcgacggccagcgcctgctcgatgaa
atcccgtggttcgcggccggcgccttgcgctgccacttgctgcccgactgggaaaccctg
ccctacgacgctttttcgccgcaccaggacctggtctcggaacgcctggcgacgctgcat
gaagtccagaaccgccactgcgacgtgctgatcgtgccggccaccaccgcgctggtgcgg
ctggcgccgccgtcgttcctggccgcctacaccttctttttcaagaagggcgaaaagctc
gacgaagcgcgcctgaagtcgcagctgacgctggccggctacacccatgtgtcgcaagtg
atgtcgcccggcgaatattcggtgcgcggcggcttgctcgacctgttcccgatggggtcc
gcgctgccgtaccggctcgacctgttcggcgacaccatcgacaccatccgtaccttcgac
gccgacacccagcgctcgctgtacccggtcaaccaggtgcgcctgctgccgggccgcgaa
ttcccgatggatgaagcggcgcgcaccaccttccgcagccgttggcgcgaacagttcgaa
ggcgatccgtcgcgctcggtggtctacaaggacatcagcagcggcatcgcctcggccggc
atcgaatattatctgccgctgtttttcgacgacaccgccacgctgttcgactacctgccg
caagacgcggcgctggccctggtgggcgacatcgaccaggcgatccgccgtttctgggtc
gacacccagtcgcgctaccgcttcctgaaagccgaccgcgagcgcccgatcctggcgccg
gaagcgctattcctcagcgacgagcatttctttgcgctggccaagccgttcggccgctgg
gcgatcgccaaggatgaccaggggatgacgtcggaattgtcggcgccggtgccgaatatc
gccgtcaaccgccgcgccgacgacccgctggccaatttgcgcggctacctgctgcagccg
ggccggcgcgtgatgatttgcgccgagtcgaacggccgccgcgaaaccctgcaacagtat
ttcaccgaataccagctggacctggccccggtcgaaggctacgagggcttcgcgcacgcc
gatgccaggctgatgctcggcgtggcgccgctgcacgccggctttgaactgttcacgccg
gacggcaacctggtcttcatcaccgaaaccgagctgtatgccggttccggccggcgcgcc
ggcaagaaaaaacaggaaggcgcgacccaggtcgaatcgatggtgcgcgacctgtcggag
ctgaagatcggcgacccggtggtgcacatcaaccacggcatcgggcgctacatgggcctg
accagcatggacctgggcgaaggcgagaccgaattcctgcacctggaatacgccaaggac
accaagctgtatgtgccggtgtcgcaactgcatgtgatttcgcgctattcgggcgcctcg
ccggaagacgcgccgctgcattcgctcggttccggccagtgggaaaaggccaagaaaaag
gccgccgaccaggtgcgcgacaccgctgccgaactgctcaacctgtatgcccggcgcgcg
ctgcgcaagggccactcgttcgactattcggcgcacgactacgaacgtttcgccgacagc
ttcggcttcgacgaaaccccggaccaggccgaggcgatcaacaacgtcatcaaggacatg
acctcgggcaagccgatggaccggctggtgtgcggcgacgtcggtttcggcaagaccgaa
gtggccttgcgggccgccttcatcgccgtgatgggcggcaagcaggtggcgatcctggcg
ccgaccacgctgctggccgaacagcatgcgcaaaccttcgccgaccgcttcgccgactgg
ccggtgcgcatcgccgaattgtcgcgcttccgcagcggcaaggaaatcacgcaagcgttc
aagggcatggccgacggcacgctcgacatcgtcatcggcacccacaagctgctgtcggac
gacgtcaagtttacccgcctgggcctggtcatcatcgacgaggaacaccgcttcggcgtg
cggcagaaggaagcgctgaaggcgctgcgcgccgaggtcgacgtgctgacgctgaccgcc
acgccgatcccgcgcacgctgggcatggcgctggaaggcttgcgcgacttttcgatcatc
gccaccgcgccgcaaaaacggctggcgatcaagaccttcgtgcgcagcgaaaacgaatcg
atcatccgcgaagcctgcctgcgcgaattgaagcgcggcggccagatctacttcctgcac
aatgaggtggaaaccatccagaaccgcatggcgatgctgaccgaactgctgccggaagcg
cgcatcgcggtggcgcacggccagatgcatgaacgcgacctggaaaaagtgatgcgcgac
ttcgtcgcccagcgctttaacattttgctgtgcaccaccatcatcgaaaccggcatcgac
gtgccgaccgcgaacaccatcatcatgcaccgcgccgacaagttcggcctggcccaattg
caccagctgcgcggccgggtcggccgttcgcaccaccaggcctacgcctatttgctggtg
cacgacgtgcagggcctgagcaagctggcgcagcgccggctcgatgcgatccagcagatg
gaagagctgggcagcggcttttacctggccatgcacgacctggaaatccgcggcgccggc
gaagtattgggcgacaaccagtccggcgaaatgcatgaaatcggcttccagctgtattcc
gacatgctcaacgaggcggtccgttcgctgaagaacggcaaggagccggacctggccgcg
ccgctgtcgtcgaccaccgaaatcaacctgcatacgccggcgctgctgccggccgatttc
tgcggcgacgtgcacgagcggctatcgatctacaagcgcctcgccaactgcgcgtcgcaa
gacaggatcgacgacatccaggaagaattgatcgaccgtttcggcaaattgccggacgcc
gtcaaggcgctggtcgagacgcaccgcctgcggatcgccgccaacaccgtcggcatcgtc
aagatcgacgcccacggcgaggcggccacgctgcaattcatgccgaagccgccgatcgat
ccgatgcgcatcatcgagctgatccagaaaaaccggcacatcaagctgcatggccaggac
aagctgaaaatcaccgccagcatgccggacctggccgcccgcgtcacgcaaatcaagtcg
gcgatcaggcagctgactgcctga
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