Janthinobacterium sp. HH102: JAB4_036460
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Entry
JAB4_036460 CDS
T08624
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jah
Janthinobacterium sp. HH102
Pathway
jah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JAB4_036460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jah03400
]
JAB4_036460 (mfd)
Enzymes [BR:
jah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JAB4_036460 (mfd)
DNA repair and recombination proteins [BR:
jah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JAB4_036460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
AAA_30
DUF4217
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QOU74185
UniProt:
A0A853SVG9
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All DBs
Position
4081562..4085005
Genome browser
AA seq
1147 aa
AA seq
DB search
MSLDLTKALPKPGNRYALPALYGSSDAYALALAALELKARGQMLAVVVAQASDGQRLLDE
IPWFGGKELRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIQTRQCDVLIVPATTALVR
LAPPSFLAAYTFFFKKGETLDEARLKSQLTLAGYSHVSQVMSPGEYSVRGGLLDLFPMGS
ALPYRLDLFGDTIETIRTFDADTQRSLYPVHEVRLLPGREFPMDEAARTTFRNRWREQFE
GDPSRSVVYKDISSGIASAGIEYYLPLFFEQTATLFDYLPPDASLALVGEIDAAIGRFWT
DTQSRYRFLKADRERPILPPEALFLSDEQFFGLAKPYPRLAIAKSNDALASELSAPIPNI
AVNRRADDPLANLRSYLLQAGRRVMICAESNGRRETLQQYFSEYDLQLTPVEGSDGFLQS
DAKLMLGVAPLHAGFELFTPEGNLSFITETELYAGSGRRVGTKKQEGVTQVESMVRDLSE
LKIGDPVVHINHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGAS
PEDAPLHSLGSGQWEKAKKRAAEQVRDTAAELLNLYARRALRQGHSFEFSSHDYQRFADS
FGFDETPDQAEAIHNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILA
PTTLLAEQHAQTFADRFADWPVRIAELSRFRTGKEITQAFKGMADGTIDIVIGTHKLLSD
DVKFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSII
ATAPQKRLAIKTFVRSEGEAIIREACLRELKRGGQIYFLHNEVETIQNRLAMLTELLPEA
RIAVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDVQGLTKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG
EVLGESQSGEMTEIGFQLYSDMLNEAVRSLKAGKEPDLAAPLASTTEINLHVPALLPADF
CGDVHERLSIYKRLANCATQEKIDDIQEELIDRFGKLPDAVKALVETHRLRIAAKTVGIV
KIDVHGEAATLQFMAKPPIDPMRIIGLIQKNRHIKLHGQDKLKITAAMPDLAARVTQIKT
TIKQLTV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccttagacttaacgaaagccctccccaagcccggcaaccgctacgcgctgcccgcc
ctgtatggttcatccgacgcctatgccctggcgctggccgcactggaattgaaagcgcgg
ggccagatgctggccgttgtggtggcgcaggccagcgacggccagcgcctgctcgatgaa
atcccgtggtttggcggcaaggaactgcgctgccatctgctgccggactgggaaaccctg
ccctacgacgccttttcgccgcaccaggatctggtctcggagcgcctggccaccctgcac
gaaatccagacgcgccagtgcgacgtgctgatcgtgccggccaccacggcgctggtgcgc
ctggcgccgccgtccttcctggccgcctacaccttcttcttcaagaagggtgaaaccctg
gacgaggcacgcctgaagtcgcagctgaccctggccggctacagccatgtgtcgcaagtg
atgtcgccgggcgaatactcggtgcgcggcggcctgctcgacctgttccccatgggttcg
gccctgccctaccggctcgacctgttcggcgacaccatcgaaaccatccgcaccttcgac
gccgacacccagcgctcgctctaccccgtgcatgaagtgcggctgctgccgggccgcgaa
tttcccatggacgaagcggcgcgcaccaccttccgcaaccgctggcgcgagcaattcgaa
ggcgacccgtcgcgctccgtcgtctacaaggacatcagcagcggcattgcctcggccggt
atcgaatactatctgcccctgttcttcgagcagacggcgaccctgttcgactacctgccg
cccgacgcctcactggccctggtgggcgagatcgacgccgccatcggccgcttctggacc
gacacgcagtcgcgctaccgctttttgaaggccgaccgcgagcggcctatcctgccgccc
gaagcgctgttcctgtccgacgagcagttctttggcctggccaagccctacccgcgcctg
gcgattgcgaaatcgaacgatgcgctggcgtccgaactgtcggcgccgattcccaacatc
gccgtcaaccgccgcgccgacgacccgctggccaacctgcgcagctatctgctgcaagcg
ggccgccgcgtgatgatctgcgccgaatcgaacggccgccgcgaaaccctgcagcagtac
ttcagcgaatacgacctgcagctgacaccggtggaaggcagcgacggttttctgcagtcc
gacgccaagctgatgctgggcgtggcgccgctgcacgcgggcttcgagctgtttacgccg
gaaggaaatttatccttcatcaccgagacggagctgtatgccggttccggccgcagggtc
ggcaccaagaaacaggaaggcgtgacgcaggtcgagtcgatggtgcgcgacctgtccgag
ctgaaaatcggcgaccccgtcgtgcacatcaaccacggcatcgggcgctacatgggcctg
accagcatggacctgggcgaaggcgagacggaatttttgcacctcgaatacgcgaaggac
accaagctgtacgtgcccgtgtcgcagctgcatgtgatctcgcgctattcgggcgcctcg
ccggaagacgcgccgctgcattcgctcggctcgggccagtgggaaaaggcgaagaagcgc
gccgccgaacaggtgcgcgacacggccgccgaactgctcaacctgtacgcgcgccgcgcg
ctgcgccagggccactcgttcgaattctcgtcgcacgactaccagcgcttcgccgacagc
ttcggcttcgacgagacgccggaccaggccgaggccatccacaacgtcatcaaggacatg
acgtccggtaagccgatggaccgcctcgtctgtggcgacgtcggcttcggcaagacggaa
gtggcgctgcgcgccgccttcatcgccgtcatgggaggcaagcaggtagcgatactggcg
cccaccaccctgctggccgagcagcatgcacaaaccttcgccgaccgcttcgccgactgg
cccgtgcgcatcgcggaattgtcgcgcttccgcaccggcaaggagatcacgcaggcgttc
aagggcatggccgacggcaccatcgacatcgtcatcggcacacataaactgctgtcggac
gacgtgaaattcacgcgcctgggcctcgtcatcatcgatgaggaacaccggttcggcgtg
cgccagaaggaagcattgaaagccttgcgcgcggaagtggacgtgctgaccctgacggcc
acgccgatcccgcgcaccctgggcatggcgctggaaggcttgcgcgacttttccatcatc
gccacggcgccgcaaaagcgccttgccatcaagacgtttgtccgcagcgagggcgaagcc
atcatccgcgaagcgtgcttgcgcgaactcaaacgcggtggccagatctacttcctgcac
aacgaggtggaaaccatccagaaccgcctggccatgctgacggaactgctgcccgaggcg
cgcatcgccgtggcgcacggccagatgcacgagcgcgacctggaaaaggtcatgcgcgac
ttcgtcgcccagcgtttcaatattctgctgtgcacgacgatcatcgagacgggtatcgac
gtgccgacggcgaacaccatcatcatgcaccgcgccgacaagttcggcctggcgcagctg
caccagttgcgcggccgcgtgggccgctcgcatcaccaggcctacgcctacctgctggtg
cacgacgtgcagggcctgacgaaactggcgcagcgccgcctggacgccatccagcagatg
gaagagctgggcagcggcttttacctggccatgcacgacctggaaatccgcggcgccggc
gaggtgctgggcgagagccagtcgggcgagatgacggaaatcggcttccagctgtattcg
gacatgctcaacgaagccgtgcgctcgctgaaggccggcaaggagccggacctggccgcg
ccgctggcctcgaccaccgagatcaacctgcacgtgccggccctgctgccggcggacttc
tgcggcgacgtgcacgagcgcctgtcgatctacaagcgcctggccaactgcgccacgcaa
gagaaaatcgacgatatccaggaagagctgatcgaccgcttcggcaagctgcccgacgcc
gtcaaggccctggtcgagacgcaccgcctgcgcatcgcggcgaaaaccgtgggcatcgtc
aagatcgacgtgcatggcgaggcggccaccctgcaattcatggccaagccgcccatcgac
ccgatgcgcatcatcggcctgatccagaagaaccgccatatcaagctgcatggccaggac
aagctgaaaatcacggccgccatgccggacctggccgcgcgtgtgacgcagatcaagacc
accatcaagcaattgacggtgtag
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