Janthinobacterium sp. 17J80-10: EKL02_11085
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Entry
EKL02_11085 CDS
T05896
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jaj
Janthinobacterium sp. 17J80-10
Pathway
jaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKL02_11085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jaj03400
]
EKL02_11085 (mfd)
Enzymes [BR:
jaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKL02_11085 (mfd)
DNA repair and recombination proteins [BR:
jaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EKL02_11085 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
DUF4217
HemY_N
Motif
Other DBs
NCBI-ProteinID:
QAU34684
UniProt:
A0A410UTQ3
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All DBs
Position
2474812..2478270
Genome browser
AA seq
1152 aa
AA seq
DB search
MPFDLKKSLPKPGHRFVLPAVHGSADAFALAQAAIELAAQKRMLVVVVASAPDAQRLLTE
IRWFGAPDGANEAAQLRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIRNGQCDVLIVP
ATTALVRMAPPSFLAAYTFFFKQGEKLDEAQLKSQLTLAGYTHVAQVMSPGEYSVRGGLI
DLFPMGSALPYRLDLFGDTIETIRTFDADTQRSLYPVREVRLLPGREFPMDEAARTAFRG
RWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEQTATLFEYLPDDVTFALVGDIDA
AIKRFWNDTQSRYKFLKSDRERPLLEPQQLFLTDEDFFTLAKPHGRWVIQSDPAPSELSA
PLPDIAVNRRLDDPLTNLRAFLLQTDKRVLVCADSGGRRETLSQYFAEYGLALAPCDGYT
DFATSSEKLMLGVAPLQAGFQLLADGANLAFITETELYAGSGRRAGRKRQEGATQVEAMV
RDLSELKIGDPVVHVNHGIGRYMGLLSMDMGEGETEFLHLEYAKESKLYVPVSQLHVISR
YSGAAPEDAPLHALGSGQWEKARKKAAQQIRDTAAELLNLYARRAARQGHAFQYSAHDYD
AFAESFGFEETPDQAAAINAVITDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQ
VALLAPTTLLAEQHAQNFADRFADWPVRIAELSRFRSGKEITQAIKGMAEGTIDIAIGTH
KLLSPDMQFSRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR
EFSIIATAPQKRLAIKTFVRTEGESVIREACLRELKRGGQVYFLHNEVETIENRKAMLEA
LLPEARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIVMHRADKF
GLAQLHQLRGRVGRSHHQAYAYLLVHDVQGLTKLAQRRLDAIQQMEELGSGFYLAMHDLE
IRGAGEVLGESQSGEMIEIGFQLYSDMLNEAVRSLKNGKEPDLAAPLATTTEINLHVPAL
LPADFCGDVHERLSIYKRLANCSAAGAIDDLQEELIDRFGKLPDPVKALIETHRLRVAAK
PVGIVKIDAHAESAVLQFEPNPPIDAMKIIDLIQKNRHIKLHGQDKLRITVGMPDLAARV
NQVKTAIRALLS
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgccgttcgacctgaaaaaatccttgcccaagcccggccaccgctttgtcctgccagcc
gtgcatggatctgccgacgccttcgcgctggcacaagccgccatcgaactggcggcgcaa
aagcgcatgctggtggtcgtggtcgccagcgccccggatgcccagcgcctgctgacggaa
atccgctggtttggcgcacctgatggcgccaatgaagccgcgcagctgcgctgccacctg
ctgccggactgggaaacgctgccctacgacgcgttttccccgcaccaggacctggtctcg
gagcgcctggcaaccctgcatgaaatccgcaacggccagtgcgatgtcctgatcgtaccc
gccaccacggcgctggtgcgcatggcgccgccctcctttctggctgcctacaccttcttt
ttcaagcagggtgaaaagctcgatgaagcgcagctcaagtcgcagctgaccctggccggc
tatacccatgtggcgcaagtcatgtcgcccggcgagtattcggtgcgcggcggcctgatc
gacctgttcccgatgggctctgccctgccctaccggctcgacctgttcggcgacaccatc
gagaccatccgcaccttcgatgccgatacccagcgctcgctttacccggtgcgcgaagtg
cgcctgctgccgggccgcgaattcccgatggatgaggcggcgcgcacggccttccgcggc
cgctggcgcgaagtcttcgagggcgacccatcgcgctcggccatctacaaggatatcggc
aacggcatcgcatcggccggcatcgagtattacctgccgctgtttttcgagcagaccgcc
accttgttcgagtacctgcctgacgacgtcacgtttgccctggtgggcgacatcgacgct
gccatcaagcgcttctggaacgacacgcagtcgcgctacaaattcctcaagtccgaccgc
gagcgcccgctgctggagccgcagcaattgttcctgaccgacgaggacttcttcacgctc
gccaagccgcacggacgctgggtaatccagtccgacccggcgccttccgaattgtcggcg
ccgctgccggatattgccgtcaaccgccgcctcgacgatccgctgacgaacctgcgcgcc
ttcctgctgcaaactgacaagcgcgtcctggtctgcgccgactcgggcggccgccgcgaa
acgctgtcgcagtatttcgccgaatacggcctggcgctcgcgccctgcgacggctacacc
gatttcgccacttcctccgaaaagctgatgcttggcgtggcccccctgcaggcaggtttc
cagctactggcggacggtgccaacctggccttcatcaccgagaccgagctgtatgccggc
tcgggccggcgcgccggccgcaagcgccaggaaggcgcaacccaggtcgaggccatggtg
cgcgacctgtcggagctgaagatcggcgacccggtggtgcacgtcaaccacggcatcggc
cgttacatgggcctgctcagcatggacatgggcgaaggcgaaaccgaattcctgcacctc
gagtacgccaaggaatccaaactttacgtgccggtgtcgcagttgcacgtgatttcccgc
tattcgggcgcagcgcccgaagatgcgccgctgcatgcgctcggctccggccagtgggaa
aaggcgcgcaagaaggcggcccagcagatccgcgacaccgccgccgaactgctcaacctc
tacgcccgccgtgccgcccgccagggccatgccttccagtattccgcgcacgattacgac
gcctttgccgaaagcttcggcttcgaggagacgcccgaccaggccgccgccatcaacgcg
gtcatcaccgacatgacctctggcaagcccatggaccgcctgatctgcggcgatgtcggt
ttcggcaagactgaagtcgccctgcgcgccgccttcgtcgccgtcatgggcggcaagcag
gtcgcgctgctggcccccaccaccctgctggccgagcagcatgcgcagaatttcgccgac
cgctttgccgactggccggtgcgaatcgccgaactgtcgcgctttcgcagcggcaaggaa
atcacccaggccatcaagggcatggccgaaggcaccatcgacatcgccatcggcacgcac
aagctgctctcgcccgacatgcagttctcgcgcctcggtctcgtcatcatcgacgaggaa
caccgtttcggcgtgcgccagaaggaagccctgaaagccctgcgcgccgaggtggacgtc
ttgaccctgaccgccacgccgatcccgcgcacgctgggcatggcgctggaaggcttgcgg
gaattttccatcatcgccaccgcgccgcaaaagcgcctggcgatcaagactttcgtgcgc
acggaaggcgaatcggtgatccgcgaagcctgcctgcgcgaactgaagcgcggcggccag
gtgtacttcctgcacaacgaagtcgagaccatcgagaaccgcaaggccatgctggaagcg
ctgctgccggaagcgcgcatcggcgtggcgcacggccagatgcacgagcgcgacctggaa
aaggtgatgcgcgactttgtcgcccagcgcttcaacatcctcctgtgcaccaccatcatc
gagaccggcatcgacgtgccgaccgccaataccatcgtcatgcaccgcgccgacaagttt
ggcctcgcgcagctgcaccagttgcgcgggcgcgtcggccgctcgcaccaccaggcctat
gcctacctgctggtgcacgacgtccaggggctgaccaagctggcgcagcgcaggctcgac
gccatccagcagatggaagaactgggcagcggtttttacctggccatgcacgacctcgag
atccgcggcgccggcgaagtgctgggcgaaagccagtccggcgaaatgatcgagatcggc
ttccagctgtattccgacatgctgaacgaagcggtccggtcgctgaagaacggtaaggag
ccggacctcgccgcgccgctggccaccaccaccgaaatcaacctgcacgtgccggcgctg
ctgccggcggatttctgcggcgatgtgcacgagcgcctgtcgatctacaagcgcctggcc
aactgcagcgcggccggcgccatcgacgacctgcaggaagaactgatcgaccgtttcggc
aagctgccggatccggtcaaggcgctgatcgaaacgcaccgcctgcgcgtggccgccaag
ccggtcggcatcgtcaagatcgatgcccatgccgagtcggcagtgctgcagttcgagccc
aatccgccgatcgacgccatgaagatcatcgacctgatccagaagaaccgccacatcaag
ctgcacgggcaggataaactacgcattaccgtgggcatgccggatctggcggcgcgggtg
aaccaggtcaagaccgcgatccgcgcactgctgtcatga
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