Janthinobacterium tructae: FJQ89_08105
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Entry
FJQ89_08105 CDS
T06359
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jas
Janthinobacterium tructae
Pathway
jas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FJQ89_08105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jas03400
]
FJQ89_08105
Enzymes [BR:
jas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJQ89_08105
DNA repair and recombination proteins [BR:
jas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FJQ89_08105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
SNF2-rel_dom
DUF4217
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QDG70391
UniProt:
A0A4Y6RBN9
LinkDB
All DBs
Position
1850071..1853514
Genome browser
AA seq
1147 aa
AA seq
DB search
MSLDLTKALPKPGNRYALPALYGSSDAYALALAALALKARGQMLAVVVAQASDGQRLLDE
IPWFGGKELRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIQTRQCDVLIVPATTALVR
LAPPSFLAAYTFFFKKGEKLDEARLKSQLTLAGYSHVSQVMSPGEYSVRGGLLDLFPMGS
ALPYRLDLFGDTIETIRTFDADTQRSLYPVHEVRLLPGREFPMDEAARTTFRNRWREQFE
GDPSRSVVYKDISSGIASAGIEYYLPLFFEQTATLFDYLPPDASLALVGEIDAAIGRFWT
DTQSRYRFLKADRERPILPPESLFLSDEQFFGLAKPYPRLAIAKSNDALASELSAPVPNI
AVNRRADDPLANLRSYLLQAGRRVMICAESNGRRETLQQYFTEYDLHLTPVEGSDGFLQS
DAKLMLGVAPLHAGFELFTPDGNLAFITETELYAGSGRRVGTKKQEGVTQVESMVRDLSE
LKIGDPVVHINHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGAS
PEDAPLHSLGSGQWEKAKKRAAEQVRDTAAELLNLYARRALRQGHSFEFSSHDYQRFADS
FGFDETPDQAEAIRNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILA
PTTLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAFKGMADGTIDIVIGTHKLLSD
DVKFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSII
ATAPQKRLAIKTFVRSEGEAIIREACLRELKRGGQIYFLHNEVETIQNRLAMLTELLPEA
RIAVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDVQGLTKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG
EVLGENQSGEMTEIGFQLYSDMLHEAVRSLKAGKEPDLAAPLASTTEINLHVPALLPADF
CGDVHERLSIYKRLANCATPEKIDDIQEELIDRFGKLPDPVKALIETHRLRIAAKTVGIV
KIDVHGEAATLQFMAKPPIDPMRIIDLIQKNRHIKLHGQDKLKITAAMPDLAARVTQIKT
TIKQLTV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccttagacttaacaaaagccctccccaagcccggcaaccgctacgcgctgcccgcc
ctgtatggttcatccgacgcctatgccctggcgctggccgctttggccttgaaagcgcgg
ggccagatgctggccgtggtggtggcgcaggccagcgacggccagcgcctgctcgatgaa
atcccgtggtttggcggcaaggaactgcgctgccatctgctgccggactgggaaaccctg
ccctacgacgccttttcgccgcaccaggacctggtctccgaacgcctggccaccctgcac
gaaatccagacgcgccagtgcgacgtgctgatcgtgccggccaccacggcgctggtgcgc
ctggcgccgccgtcgttcctcgctgcctacaccttcttcttcaagaagggcgaaaagctc
gacgaagcgcgcctgaagtcgcagctgaccctggccggctacagccatgtctcgcaagtg
atgtcgcccggcgaatactcggtgcgcggcggcctgctcgacctgttccccatgggttcg
gccctgccctaccgcctggacctgttcggcgacaccatcgagaccatccgcacgttcgac
gccgatacccagcgctcgctctaccccgtgcacgaagtgcggctgctgccggggcgcgaa
tttcccatggacgaagcggcgcgcaccaccttccgcaaccgctggcgcgaacagttcgag
ggcgacccgtcgcgctcggtggtctacaaggacatcagcagcggcatcgcttcggccggt
atcgaatactatctgcccctgttcttcgagcagacggccaccctgttcgactacctgccg
cccgacgcttctctggccctggtgggcgagatcgacgctgccatcgggcgcttctggacc
gatacccagtcgcgctaccgctttttgaaggccgaccgcgagcggccgatcctgccgccc
gaatcgctgttcctgtccgacgagcagttcttcggcctggccaagccctacccgcgcctg
gcgattgcgaaatcgaacgacgcgctggcctccgaactgtcggcgcccgtgccgaacatc
gccgtcaaccgccgcgccgacgacccgctggccaacctgcgcagctatctgctgcaagcg
ggccgccgcgtgatgatctgcgccgaatcgaacggccgccgcgaaaccttgcagcagtac
ttcaccgaatacgatctgcacctgacgccggtggaaggcagcgacggttttctgcagtcc
gacgccaaactgatgctgggcgtggcgccgctgcatgcgggcttcgagctgttcacgccg
gacggcaatctggccttcatcaccgagacggaactgtatgccggttccggccgcagggtc
ggcaccaagaagcaggaaggcgtgacgcaggtcgagtcgatggtgcgcgacctgtcggag
ctgaaaatcggcgaccccgtggtgcacatcaaccacggcatcgggcgctacatgggcctg
accagcatggacctgggcgaaggcgagacggaatttttgcacctcgagtacgccaaggac
accaagctgtacgtgccagtgtcacagctgcatgtgatctcgcgctattcgggcgcttcg
ccggaagacgcgccgctgcactcgctcggctcgggccagtgggaaaaggcgaaaaaacgc
gcggccgaacaggtgcgcgacacggccgccgagctgctcaacctgtatgcgcgccgcgcg
ctgcgccagggccactcgttcgaattctcgtcacacgactaccagcgcttcgccgacagc
ttcggcttcgacgagacgccggaccaggccgaggccatccgcaacgtcatcaaggacatg
acctcgggcaaaccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagacggaa
gtggcgctgcgcgcggcttttattgccgtgatgggcggcaagcaggtggcgatcctggcg
cccaccaccctgctggccgagcagcatgcgcaaaccttcgccgaccgcttcgccgactgg
cccgtgcgcatcgccgaattgtcgcgcttccgcagcggcaaggagatcacgcaggcgttc
aagggcatggccgacggcaccatcgacatcgtcatcggcacgcataaactgctgtcggac
gacgtgaagtttacccgtttgggcctggtcatcatcgacgaggaacacaggttcggcgtg
cgccagaaggaagccctgaaagccttgcgcgcggaagtggacgtgctgaccctgacggct
acgccgatcccgcgcaccctgggcatggcgctggaaggcttgcgcgacttttccatcatc
gccacggcgccgcaaaagcgcctggccatcaaaacgttcgtgcgcagcgaaggcgaggcg
atcatccgcgaagcgtgtctgcgcgaactcaaacgcggcggccagatctacttcctgcac
aacgaggtggaaaccatccagaaccgcctggccatgctgacggaactgctgcccgaggcg
cgcatcgccgtggcgcacggccagatgcacgagcgcgacctggaaaaggtcatgcgcgac
ttcgtcgcccagcgtttcaacattttgctgtgcacgaccatcatcgaaacgggcatcgac
gtgccgacggcgaacaccatcatcatgcaccgcgccgacaagttcggcctggcgcagctg
caccagctgcgcggccgcgtgggccgttcgcatcaccaggcctacgcctacctgctggtg
cacgacgtgcagggcctgaccaaactggcgcagcgccgcctggacgccatccagcagatg
gaagaactgggcagcggcttttacctggccatgcacgacctggaaatccgcggtgccggc
gaagtgctgggcgagaaccagtcgggcgagatgacggaaatcggcttccagctgtattcg
gacatgctgcacgaagccgtgcgctcgctgaaagccggcaaggagccggacctggccgcg
ccgctggcctcgacgacggaaatcaatctgcacgtgccggccctgctgccagccgatttt
tgcggcgacgtgcatgaacgcctgtcgatctacaagcgcctggccaattgcgccacgcca
gagaagatcgacgatatccaggaagagctgatcgaccgcttcggcaagctgcccgacccc
gtgaaagcgctgatcgagacgcatcgcctgcgcatcgcggcgaaaaccgtgggcatcgtc
aagatcgatgtgcatggcgaggcggccaccttgcaattcatggccaagccccccatcgac
ccgatgcgcatcatcgacttgatccagaagaaccgccatatcaagctgcatggccaggac
aagctgaaaattacggccgccatgcccgacctggccgcgcgcgtgacgcagatcaagacc
accatcaagcaattgacggtgtag
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integrated database retrieval system
