KEGG   Janthinobacterium tructae: FJQ89_08980
Entry
FJQ89_08980       CDS       T06359                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
jas  Janthinobacterium tructae
Pathway
jas03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:jas00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FJQ89_08980 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jas03400]
    FJQ89_08980 (ligD)
Enzymes [BR:jas01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FJQ89_08980 (ligD)
DNA repair and recombination proteins [BR:jas03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FJQ89_08980 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QDG70536
UniProt: A0A4Y6RD59
LinkDB
Position
complement(2056224..2058713)
AA seq 829 aa
MKAALKTYQAKRNFAVTPEPAGGGEDAGEVLTFVIQKHWASRLHYDFRLELDGTLKSWAV
PKGPSYDPRDKRMAVQVEDHPLAYASFEGTIPEKQYGAGKVIIWDKGRWQAQAATPDARA
ALAAGELKFTLHGHKMQGNWVLVRMKGKGDKRSEKQPAWLLIKEKDAFARPALEFSVVDE
FPDSVRNKALPRRKVAAAPPDADLPATLSPQLATLVDTPPPDAQDWIFEAKFDGYRILAR
CDGEQVSLMTRNGNDWTAKLPKLRQALEQMGLPPGWYDGEIVVNDASGHPDFGALQRAFD
AQTTSAIVYYLFDVAYFDGHDVRSQSVEARRALLQGLLEQSPASPLVRFSEALDAAPQQL
LAHACRLGLEGVIGKRRGSPYVTRRSGDWIKLKCGLRQEFVIGGYTAPQGAREGIGSLLL
GVHDAQGKLRYAGNVGSGFDDAALRDLRRRLDALTIDTSPFAGKAGGLRRPIWVKPQLVA
EVGFAQWTSSGAVRHAVFHGLREDKKPAAIVRERAQRIDRETTMQKQATPDSVLPASFKV
SHADRVIDKDSGARKIDLVRYYALVGKLMLVHLRGRPVSLVRAPAGVGGELFFQKHADTA
TMPGVKQLDPGLDPEHAAMLEVASVQGLLSAAQWNVVEFHTQNALASAYDTPNRMVFDLD
PGKGVAWPAIREAAMLLRAFLTELGLPAWLKTSGGKGLHVVVPIRPKYDWDTVKAFSQAI
VAHMAQQIPARFVVKSGPANRVGKIFIDYLRNGRGATTVCAWSARTRSGLGISVPLAWEE
LDKLKAGDQWTVSNVHSRLDVGNAPWAGYARSARGIDGAMQKLGFTVAA
NT seq 2490 nt   +upstreamnt  +downstreamnt
atgaaagccgccttgaaaacctatcaagccaagcgcaatttcgccgtcacgcccgagccg
gcaggtggcggcgaggacgcgggcgaggtgctcaccttcgtcatccagaagcactgggcc
agccgtttgcactatgattttcgcctggaactcgatggcacgctgaaaagctgggccgtg
ccgaaagggcccagctacgacccgcgcgacaagcgcatggcggtgcaggtggaagaccat
cccctggcctacgccagttttgaaggcacgatcccggaaaaacagtatggcgcgggcaag
gtcatcatctgggacaagggcagatggcaagcgcaggcggccacgccggacgcacgcgcc
gcgctggcggccggcgaactgaaattcaccctgcatggccacaagatgcagggcaactgg
gtgctggtgcgcatgaagggcaaaggagataagcgcagcgaaaagcagccggcctggctg
ctgatcaaggaaaaagacgcgtttgcccggccggcactggaattttctgtcgtggacgaa
ttccccgacagcgtcaggaacaaggccctgcccaggcgcaaggtggctgccgcgccgccg
gatgccgatttacccgccaccctgtcgccccagctggccaccctcgtcgatacgccgccg
ccagatgcgcaagactggatcttcgaggcgaaatttgacggctatcgcatccttgcacgt
tgcgatggcgaacaggtcagcctgatgacgcgcaatggcaatgactggacggcgaaactg
ccgaagctgcggcaggcgctggaacagatgggcttgccgccaggctggtatgacggtgaa
atcgtcgtcaacgatgccagcggtcaccctgacttcggtgccttgcagcgcgcgttcgat
gcgcaaacgaccagcgccatcgtgtattacctgttcgacgtggcatatttcgatggccac
gatgtgcggagccagagcgtcgaggcgcgcagggctctgctgcaggggctgctggaacaa
tcgcccgcctcgccgctggtgcgtttcagcgaggcgctcgatgctgcgccgcagcagttg
ctggcccatgcttgccgcctggggctggaaggggtgatcggcaagcggcgcggctcgccc
tacgttacgcggcgttccggcgactggatcaagcttaaatgcgggctgcgccaggaattc
gtcatcggcggctatacggcgccgcagggcgcgcgtgaaggcatcggttcgctgctgctg
ggcgtgcacgatgcgcagggcaagctgcgctacgcgggcaatgtgggcagcggctttgat
gatgccgccttgcgcgacttgcgccgccgcctcgacgcactcaccattgatacgagtccg
tttgcgggcaaggcgggcggcttgcgccggcccatctgggtcaagccgcaactggtggcc
gaggtcggctttgcgcaatggaccagtagcggtgccgtgcgccatgccgtgtttcacggt
ttgcgcgaagataaaaaaccggccgccatcgtgcgcgagcgggcacagcggatcgacagg
gagacgacgatgcagaagcaagccacgccggacagcgtcttgccggccagtttcaaggtc
agccatgcagaccgggtgatcgacaaggacagcggcgcgcgcaagatcgatctggtgcgc
tattacgcgttggtgggcaagctgatgctcgtgcacttgcggggccggcccgtgtcgctg
gtgcgcgcgccggccggcgtgggcggtgagctgtttttccagaagcatgccgataccgcg
accatgccgggtgtcaaacaactcgatcccggcctcgatcccgagcatgccgccatgctg
gaagttgccagcgtacagggtctgttgtcggcggcgcagtggaatgtggtggagtttcac
acgcaaaacgcgctggccagcgcctacgacacgccgaaccgtatggtgttcgacctggat
ccgggcaagggcgtggcctggcccgccatccgcgaagcggccatgctgttgcgcgccttc
ctgacggagctggggctgcccgcctggctgaaaaccagcggcggcaagggcttgcatgtg
gtcgtgccgatccgcccgaaatacgactgggacacggtcaaggcgttttcgcaagccatc
gtggcgcacatggcgcagcagataccggcgcgttttgtcgtcaagagcggtcccgccaac
cgcgtcggcaagatcttcatcgactatttgcgcaacggacggggcgccaccaccgtgtgc
gcatggtcggcccgcacgcgctccgggctgggcatttccgtgccgctggcctgggaagag
ctcgacaaactgaaggcgggcgatcaatggacggtgagcaacgtccacagccgcctcgac
gtgggcaatgcgccctgggccggctatgcgcgcagcgccaggggcatcgatggggccatg
cagaaactgggtttcactgtggcggcctga

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