Janthinobacterium tructae: FJQ89_08980
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Entry
FJQ89_08980 CDS
T06359
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
jas
Janthinobacterium tructae
Pathway
jas03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
jas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FJQ89_08980 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jas03400
]
FJQ89_08980 (ligD)
Enzymes [BR:
jas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FJQ89_08980 (ligD)
DNA repair and recombination proteins [BR:
jas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FJQ89_08980 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QDG70536
UniProt:
A0A4Y6RD59
LinkDB
All DBs
Position
complement(2056224..2058713)
Genome browser
AA seq
829 aa
AA seq
DB search
MKAALKTYQAKRNFAVTPEPAGGGEDAGEVLTFVIQKHWASRLHYDFRLELDGTLKSWAV
PKGPSYDPRDKRMAVQVEDHPLAYASFEGTIPEKQYGAGKVIIWDKGRWQAQAATPDARA
ALAAGELKFTLHGHKMQGNWVLVRMKGKGDKRSEKQPAWLLIKEKDAFARPALEFSVVDE
FPDSVRNKALPRRKVAAAPPDADLPATLSPQLATLVDTPPPDAQDWIFEAKFDGYRILAR
CDGEQVSLMTRNGNDWTAKLPKLRQALEQMGLPPGWYDGEIVVNDASGHPDFGALQRAFD
AQTTSAIVYYLFDVAYFDGHDVRSQSVEARRALLQGLLEQSPASPLVRFSEALDAAPQQL
LAHACRLGLEGVIGKRRGSPYVTRRSGDWIKLKCGLRQEFVIGGYTAPQGAREGIGSLLL
GVHDAQGKLRYAGNVGSGFDDAALRDLRRRLDALTIDTSPFAGKAGGLRRPIWVKPQLVA
EVGFAQWTSSGAVRHAVFHGLREDKKPAAIVRERAQRIDRETTMQKQATPDSVLPASFKV
SHADRVIDKDSGARKIDLVRYYALVGKLMLVHLRGRPVSLVRAPAGVGGELFFQKHADTA
TMPGVKQLDPGLDPEHAAMLEVASVQGLLSAAQWNVVEFHTQNALASAYDTPNRMVFDLD
PGKGVAWPAIREAAMLLRAFLTELGLPAWLKTSGGKGLHVVVPIRPKYDWDTVKAFSQAI
VAHMAQQIPARFVVKSGPANRVGKIFIDYLRNGRGATTVCAWSARTRSGLGISVPLAWEE
LDKLKAGDQWTVSNVHSRLDVGNAPWAGYARSARGIDGAMQKLGFTVAA
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccgccttgaaaacctatcaagccaagcgcaatttcgccgtcacgcccgagccg
gcaggtggcggcgaggacgcgggcgaggtgctcaccttcgtcatccagaagcactgggcc
agccgtttgcactatgattttcgcctggaactcgatggcacgctgaaaagctgggccgtg
ccgaaagggcccagctacgacccgcgcgacaagcgcatggcggtgcaggtggaagaccat
cccctggcctacgccagttttgaaggcacgatcccggaaaaacagtatggcgcgggcaag
gtcatcatctgggacaagggcagatggcaagcgcaggcggccacgccggacgcacgcgcc
gcgctggcggccggcgaactgaaattcaccctgcatggccacaagatgcagggcaactgg
gtgctggtgcgcatgaagggcaaaggagataagcgcagcgaaaagcagccggcctggctg
ctgatcaaggaaaaagacgcgtttgcccggccggcactggaattttctgtcgtggacgaa
ttccccgacagcgtcaggaacaaggccctgcccaggcgcaaggtggctgccgcgccgccg
gatgccgatttacccgccaccctgtcgccccagctggccaccctcgtcgatacgccgccg
ccagatgcgcaagactggatcttcgaggcgaaatttgacggctatcgcatccttgcacgt
tgcgatggcgaacaggtcagcctgatgacgcgcaatggcaatgactggacggcgaaactg
ccgaagctgcggcaggcgctggaacagatgggcttgccgccaggctggtatgacggtgaa
atcgtcgtcaacgatgccagcggtcaccctgacttcggtgccttgcagcgcgcgttcgat
gcgcaaacgaccagcgccatcgtgtattacctgttcgacgtggcatatttcgatggccac
gatgtgcggagccagagcgtcgaggcgcgcagggctctgctgcaggggctgctggaacaa
tcgcccgcctcgccgctggtgcgtttcagcgaggcgctcgatgctgcgccgcagcagttg
ctggcccatgcttgccgcctggggctggaaggggtgatcggcaagcggcgcggctcgccc
tacgttacgcggcgttccggcgactggatcaagcttaaatgcgggctgcgccaggaattc
gtcatcggcggctatacggcgccgcagggcgcgcgtgaaggcatcggttcgctgctgctg
ggcgtgcacgatgcgcagggcaagctgcgctacgcgggcaatgtgggcagcggctttgat
gatgccgccttgcgcgacttgcgccgccgcctcgacgcactcaccattgatacgagtccg
tttgcgggcaaggcgggcggcttgcgccggcccatctgggtcaagccgcaactggtggcc
gaggtcggctttgcgcaatggaccagtagcggtgccgtgcgccatgccgtgtttcacggt
ttgcgcgaagataaaaaaccggccgccatcgtgcgcgagcgggcacagcggatcgacagg
gagacgacgatgcagaagcaagccacgccggacagcgtcttgccggccagtttcaaggtc
agccatgcagaccgggtgatcgacaaggacagcggcgcgcgcaagatcgatctggtgcgc
tattacgcgttggtgggcaagctgatgctcgtgcacttgcggggccggcccgtgtcgctg
gtgcgcgcgccggccggcgtgggcggtgagctgtttttccagaagcatgccgataccgcg
accatgccgggtgtcaaacaactcgatcccggcctcgatcccgagcatgccgccatgctg
gaagttgccagcgtacagggtctgttgtcggcggcgcagtggaatgtggtggagtttcac
acgcaaaacgcgctggccagcgcctacgacacgccgaaccgtatggtgttcgacctggat
ccgggcaagggcgtggcctggcccgccatccgcgaagcggccatgctgttgcgcgccttc
ctgacggagctggggctgcccgcctggctgaaaaccagcggcggcaagggcttgcatgtg
gtcgtgccgatccgcccgaaatacgactgggacacggtcaaggcgttttcgcaagccatc
gtggcgcacatggcgcagcagataccggcgcgttttgtcgtcaagagcggtcccgccaac
cgcgtcggcaagatcttcatcgactatttgcgcaacggacggggcgccaccaccgtgtgc
gcatggtcggcccgcacgcgctccgggctgggcatttccgtgccgctggcctgggaagag
ctcgacaaactgaaggcgggcgatcaatggacggtgagcaacgtccacagccgcctcgac
gtgggcaatgcgccctgggccggctatgcgcgcagcgccaggggcatcgatggggccatg
cagaaactgggtttcactgtggcggcctga
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