Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_09790
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Entry
YQ44_09790 CDS
T04539
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jaz
Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YQ44_09790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jaz03400
]
YQ44_09790
Enzymes [BR:
jaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YQ44_09790
DNA repair and recombination proteins [BR:
jaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YQ44_09790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
AAA_30
ERCC3_RAD25_C
DUF4217
Motif
Other DBs
NCBI-ProteinID:
APA68077
UniProt:
A0A1I9XWD5
LinkDB
All DBs
Position
complement(2220141..2223584)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSLDLTKSLPKPGSRFALPALYGSSDAYALALAALALKARGQMLAVVVAQASDGQRLLDE
IPWFGGKELRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIGNRQCDVLIVPATTALVR
LAPPSFLAAYTFFFKKGEKLDEARLKSQLTLAGYSHVSQVMSPGEYSVRGGLLDLFPMGS
ALPYRLDLFGDTIETIRTFDADTQRSLYPVHEVRLLPGREFPMDEAARTTFRNRWREQFE
GDPSRSVVYKDISSGIASAGIEYYLPLFFEQTATLFDYLPPDASLALVGDIDAAIGRFWT
DTQSRYRFLKADRERPILAPEALFLSDEQFFGLAKPYPRLAITKSNDALASELSAPVPNI
AVNRRADDPLANLRSYLLQSGRRVMICAESNGRRETLQQYFTEYDLHLTPVEGCDGFLQS
DAKLMLGVAPLHAGFELFTPEGNLSFITETELYAGSGRRVGTKKQEGVTQVESMVRDLSE
LKIGDPVVHINHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGAS
PEDAPLHSLGSGQWEKAKKRAAEQVRDTAAELLNLYARRALRQGHSFEFSAHDYQRFADS
FGFDETPDQAEAINNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILA
PTTLLAEQHAQTFADRFADWPVRIAELSRFRTGKEITQAFKGMADGTIDIVIGTHKLLSD
DVKFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSII
ATAPQKRLAIKTFVRSEGEAIIREACLRELKRGGQIYFLHNEVETIQNRLAMLTELLPEA
RIAVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDVQGLTKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG
EVLGESQSGEMTEIGFQLYSDMLNEAVRSLKAGKEPDLAAPLASTTEINLHVPALLPADF
CGDVHERLSIYKRLANCATQDKIDDIQEELIDRFGKLPDPVKALIETHRLRIAAKTVGIV
KIDVHGEAATLQFMAKPPIDPMRIIELIQKNRHIKLHGQDKLKITAAMPDLAARVTQIKT
TIKQLTV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccttagacttaacaaaatccctccccaagcccggcagccgctttgcgctgcccgcc
ctgtatggttcatccgacgcctatgcgctggcattggccgcgctggcattgaaggcgcgc
ggccagatgctggccgtggtggtggcgcaggccagcgacggccagcgcctgctcgatgaa
atcccttggtttggcggcaaggaactgcgctgccacctgctgccggactgggaaaccctg
ccctacgacgccttttcgccgcaccaggacctagtgtccgaacgcctggccaccctgcac
gaaatcggcaaccgccagtgcgacgtgctgatcgtgccggccaccacggcgctggtgcgc
ctggcgccgccatccttcctggccgcctacaccttcttcttcaagaagggcgaaaagctc
gacgaggcgcggttgaagtcgcagctgaccctggccggctacagccacgtctcgcaagtg
atgtcgcccggcgaatactcggtgcgcggcggcctgctcgacctgttccccatgggctcg
gccctgccctaccggctcgacctgttcggcgacaccatcgagaccatccgcaccttcgac
gccgacacccagcgttcgctgtatcccgtgcacgaagtgcggctgctgccggggcgcgaa
ttccccatggacgaggcggcgcgcaccaccttccgcaaccgctggcgcgagcagttcgaa
ggcgacccttcgcgctcggtcgtctacaaggacatcagcagcggcatcgcctcggccggc
atcgaatactacctgcccctgttcttcgagcagacggccaccctcttcgattacctgccg
cccgacgcctcgctggccctggtgggcgacatcgacgccgccatcgggcgcttctggacc
gatacgcagtcgcgctaccgctttttaaaggcggaccgcgagcggcccatcctggcgccc
gaagcgctgttcctctcggatgaacagttcttcggcctggccaagccgtatccgcgcctg
gccatcacgaagtccaacgatgcgctggcgtccgaactgtcggcgcccgtaccgaacatc
gccgtcaaccgccgcgccgacgatccgctggccaacctgcgcagctacctgctgcaatcg
ggccgccgcgtgatgatctgcgccgaatcgaatggccgccgcgaaaccctgcagcagtac
ttcaccgaatacgatttgcacctgacgccggtggaaggctgcgacggctttttgcaatcc
gacgccaagctgatgctgggcgtggcgccgctgcacgcgggcttcgaactgttcacgccg
gaaggtaatttatccttcatcacggagacggaactgtatgccggttccggccgccgcgtc
ggcacgaagaaacaggaaggcgtgacgcaggtcgagtcgatggtgcgcgacctgtcggag
ctgaagatcggcgacccggtggtgcacatcaaccacggcatcgggcgctacatgggcctg
accagcatggatctgggcgaaggcgaaacggaatttttgcacctggaatacgccaaggac
accaagctgtacgtgcccgtgtcgcagctgcatgtgatctcgcgctattcgggcgcctcg
ccggaagacgcgccgctgcactcgctcggttcgggccagtgggaaaaggcgaaaaaacgc
gcggccgaacaggtgcgcgacacggccgccgagctgctcaacctgtatgcgcgccgcgcg
ctgcgccagggccactcgttcgaattctcggcgcacgactaccagcgcttcgccgacagc
ttcggcttcgacgagacgccggaccaggccgaggccatcaataacgtcatcaaggacatg
acctcgggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagacggaa
gtggcgctgcgcgccgccttcatcgccgtcatgggcggcaagcaggtggccatcctggcg
cccaccaccctgctggccgaacagcatgcgcaaaccttcgccgaccgcttcgccgactgg
cccgtgcgcatcgccgagctgtcgcgcttccgcaccggcaaggagatcacgcaggcgttc
aagggcatggccgacggcaccatcgacatcgtcatcggcacgcacaaactgctgtcggac
gatgtgaagtttacccgactgggcctggtcatcatcgacgaggaacacaggtttggcgtg
cgccagaaggaagcgctgaaagcgctgcgcgcggaagtggacgtgctgacgctgacggcc
acgccgatcccgcgcacgctgggcatggcgctggaaggcttgcgcgacttttccatcatc
gccacggcgccgcaaaagcgcctggccatcaagacctttgtgcgcagcgaaggcgaagcc
atcatccgcgaagcatgcttgcgcgaactgaaacggggcggccagatctacttcctgcac
aacgaggtggaaaccatccagaaccgcctggccatgctgacggaactgctgcccgaggcg
cgcatcgccgtggcgcacggccagatgcacgagcgcgacctggaaaaggtcatgcgcgac
ttcgtcgcccagcgtttcaacattttgctgtgcacgaccatcatcgagacgggcatcgac
gtgccgacggcgaacaccatcatcatgcaccgcgccgacaagttcggcctggcgcagctg
caccagctgcgcggccgcgtgggccgctcgcatcaccaggcctacgcctacctgctcgtg
cacgatgtgcagggcctgacaaaactggcgcagcgccgcctggacgccatccagcagatg
gaagagctgggcagcggcttttacctggccatgcacgacctggaaatccgcggcgccggc
gaggtgctgggcgagagccagtcgggcgagatgacggagatcggcttccagctgtattcg
gacatgctcaacgaagccgtgcgttcgctgaaggccggcaaggagccggacctggcggcg
ccgctggcgtcgacgacggaaatcaacctgcacgtgccggccctgctgccggccgatttc
tgcggcgacgtgcacgaacgcctgtcgatctacaagcggctggccaactgcgccacgcag
gacaagatcgacgatatccaggaagagctgatcgaccgcttcggcaagctgcccgacccg
gtgaaggcgctgatcgagacgcaccgcctgcgcatcgcggccaagaccgtgggcatcgtc
aagatcgacgtgcatggcgaggcggccaccctgcaattcatggccaagccgcccatcgac
ccgatgcgcatcatcgagttgatccagaaaaaccgccacatcaagctgcatggccaggac
aagctgaaaatcacggccgccatgccggacctggccgcgcgcgtgacgcagatcaagacc
accatcaagcaattgacggtttag
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integrated database retrieval system
