Janibacter cremeus: O9K63_08510
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Entry
O9K63_08510 CDS
T08913
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jcr
Janibacter cremeus
Pathway
jcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O9K63_08510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jcr03400
]
O9K63_08510 (mfd)
Enzymes [BR:
jcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O9K63_08510 (mfd)
DNA repair and recombination proteins [BR:
jcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O9K63_08510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WEV76654
LinkDB
All DBs
Position
complement(1824493..1828131)
Genome browser
AA seq
1212 aa
AA seq
DB search
MPSSLAPLLSAIAGLPGLADIPRHRTATDQLDIVAPTGLRAPTVATIGGATPGDAPQLII
TSTAREADDLSAALAEFVDPELIATFPSWETLPHERLSPRSDTVGRRLAVLRRLSHPREQ
GAGHGPLGYVIASVRAVLQPIAKGLGDLEPVALRVGDERPLTDIAEALTNAAYVRTDLVD
RRGEFAVRGGILDVFPPTEEHPIRVEFFGDTVDEIRWFKVADQRSLDATEVLWAPPCREV
LLTDTVRERAAALAGDLPGVADMLLKVAEGIAVEGMESLAPALVDGMESILDVLPKEAGV
IVLDHEKVRARAHDLVSTSEEFLQASWANAAAGNVVPIDLEGVLGTASHWTLAQAREHAL
ELGLPWWSITPFAVDEELDALAADMDDRVAHDHVGLRVPAAEPPKFRGNTEAAVAQLTEW
TAAGRRVLIATDGAGLVARVAEVLRGADVPTRVAEEGEPVELADGVVTITRASLGTGFVA
EDHRLAVLTEADLLGSSGAGASTRDMRRMPSRRRKQVDPLQLRPGDHVVHEQHGVGSFVE
MIQRTIGGATREYLVIEYAPSRRGHPGDRLFVPSDQLDQVTRYVGGDAPALNKMGGSDWQ
KTKSKAKRHVRQIAGELIRLYSARMATPGHTFGPDTPWQRELEDAFAHIETPDQLSTIDE
VKADMEKSFPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHLNTFSE
RYAGYPVTVKALSRFQTDSEAKAVLEGMKDGSVDLVIGTHRILGNEVKFKDLGMVIIDEE
QRFGVEHKEQLKALRTDVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVG
PYEEKQVAAAVHREMMREGQVFFVHNNVSTIERTAARIRELVPDARVETAHGKMGEHRLE
QVVLDFWERRFDVLVCTTIVETGLDISNANTLILDRADKFGLSQLHQLRGRVGRGRERAY
AYFLYPPDKPLTETAHDRLTTIASNTDLGSGMQVAMKDLEIRGAGNLLGGEQSGHIAGVG
FDLYVRMVGEAVADFKGEGEAAPSEVKIELPVDAHLPYEYVPGERLRLEAYKKLASAETE
EDLTEIVEELTDRYGEPPEPVRNLVAVARLRIVVRAAGLSDVVVQGKNVRFAPAQLKESQ
QLRLARLYPKSSYKEGTQTVLVPKPMTARVGGSPLRDTEVLQWATDLVNQVMLDNVIVDT
GANPPRDTSRSR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgccttcctccctcgccccgctcctgagcgcgatcgccggtctgcccggcctcgcggac
atcccccgacaccgcaccgccaccgatcagctcgacatcgtcgcgccgaccggcctgcgg
gcgccgaccgtcgccacgatcggcggggccacccccggtgacgcaccccagctgatcatc
acctcgaccgcccgtgaggccgacgacctctcggccgcgctcgccgagttcgtcgacccc
gagctcatcgcgaccttccccagctgggagaccctgccgcacgagcggctcagcccgcgc
agcgacaccgtcggccgccgcctcgccgtgctgcgtcgcctgtcgcacccgcgggagcag
ggggccggccacggtcccctcggctacgtcatcgcctccgtgcgcgcggtcctccagccg
atcgccaagggactcggcgacctcgagccggtggcgctgcgcgtcggggacgagcggccc
ctgaccgacatcgccgaggccctgaccaacgccgcctacgtgcgcaccgacctcgtcgac
cgccgcggcgagttcgccgtgcgcggcgggatcctcgacgtcttcccgccgacggaggag
cacccgatccgggtggagttcttcggcgacaccgtcgacgagatccgctggttcaaggtc
gccgaccagcgcagcctcgacgcgaccgaggtcctctgggccccgccgtgccgcgaggtc
ctgctcaccgacaccgtccgggagcgggccgccgcgctcgccggggacctgcccggtgtc
gccgacatgctcctgaaggtggccgagggcatcgccgtcgagggcatggagtccctggcg
cccgctctcgtcgacgggatggagtcgatcctcgacgtgctgccgaaggaggccggcgtc
atcgtcctcgaccacgagaaggtccgggcccgtgcccacgacctcgtctcgacgagcgag
gagttcctccaggccagctgggccaacgctgcggccggcaacgtggtgccgatcgacctc
gagggcgtcctcggcaccgcctcccactggacgctcgcccaggcccgcgagcacgcactc
gagctgggcctgccgtggtggagcatcacccccttcgccgtggacgaggagctcgacgcg
ctggcggccgacatggacgaccgggtcgcgcacgaccacgtcgggctgcgggtccccgcg
gcggagccgccgaaattccggggcaacaccgaggcggcggtcgcccagctcaccgagtgg
accgccgcgggccggcgggtgctcatcgccaccgacggagccgggctcgtcgcgcgtgtc
gccgaggtgctgcgcggtgccgacgtccccacccgggtcgccgaggagggcgagccggtc
gagctcgccgacggcgtcgtcaccatcacccgcgccagcctgggcaccggcttcgtcgcc
gaggaccaccggctcgccgtgctcaccgaggccgacctcctgggctcgagcggcgccggc
gccagcacccgtgacatgcggcggatgccgtcgcgccgccgcaagcaggtggaccccctc
cagctgcgtccgggggaccacgtcgtccacgagcagcacggtgtcgggtccttcgtcgag
atgatccagcgcaccatcggcggtgccacccgcgagtacctcgtcatcgagtacgcaccc
tcccgtcgcggccacccgggcgaccggctcttcgtcccctccgaccagctcgaccaggtc
acccgctatgtcggcggtgacgcgccggcgctgaacaagatgggtggcagtgactggcag
aagacgaagtcgaaggccaagcggcacgtccggcagatcgcgggtgagctgatccgcctg
tacagcgcccggatggccacgccgggccacaccttcgggccggacaccccgtggcagcgt
gagctcgaggacgccttcgcgcacatcgagacgccggaccagctgagcaccatcgacgag
gtcaaggcagacatggagaagtccttccccatggaccggctcatctgcggtgacgtcggc
tacggcaagacggagatcgcggtgcgcgcggccttcaaggccatccaggacggcaagcag
gtcgccgtgctcgtgccgacgaccctgctcgtccagcagcacctcaacaccttctccgag
cggtacgccgggtaccccgtgacggtcaaggcactcagccgcttccagaccgactcggag
gccaaggcggtgctggagggcatgaaggacggctccgtcgacctcgtcatcggcacccac
cgcatcctcggcaacgaggtgaagttcaaggacctcgggatggtgatcatcgacgaggag
cagcgcttcggtgtcgagcacaaggagcagctgaaggccctgcgcaccgacgtcgacgtg
ctggcgatgtccgcgacgccgatcccgcgcaccctcgagatggccgtcaccggcatccgc
gagatgtccacgctcgcgacgccgccggaggaacgccacccggtgctcaccttcgtcggg
ccgtacgaggagaagcaggtcgccgcggccgtccaccgcgagatgatgcgcgaggggcag
gtcttcttcgtgcacaacaacgtcagcacgatcgagcggaccgccgcccggatccgtgag
ctcgtgccggacgcccgcgtcgagaccgcccacggcaagatgggggagcaccggctcgag
caggtggtcctggacttctgggagcggcgcttcgacgtgctcgtgtgcacgacgatcgtc
gagaccgggctggacatctccaatgccaacacgctcatcctcgaccgggcggacaagttc
ggcctgagccagctgcaccagctgcgtggccgtgtcggtcgtggccgggagcgggcctac
gcctacttcctctacccgccggacaagccactgaccgagacggcgcacgaccgcctgacc
acgatcgcgagcaacaccgacctcggctccggcatgcaggtcgcgatgaaggacctcgag
atccgcggtgccggcaacctgctcggcggtgagcagtccggccacatcgccggagtcggg
ttcgacctgtacgtgcggatggtcggtgaggcggtcgccgacttcaagggcgaaggggag
gccgcgccgtccgaggtcaagatcgagctgcccgtggacgcccacctgccgtacgagtac
gtgccgggcgagcggctgcgcctcgaggcctacaagaagctcgcctccgcggagaccgag
gaggacctcaccgagatcgtggaggagctcaccgatcgctacggcgagccgcccgagccg
gtgcgcaacctcgtcgccgtcgcccggttgcgcatcgtcgtgcgcgccgcgggtctcagc
gacgtcgtggtgcagggcaagaacgtgcgcttcgccccggcacagctgaaggagagccag
cagctgcgcctggcccgcctgtacccgaagtcgagctacaaggagggcacccagacggtg
ctcgtccccaagccgatgaccgcgcgggtcggaggcagcccccttcgcgacacggaggtg
ctgcagtgggccaccgacctggtcaatcaggtcatgctcgacaatgtcatcgtggacact
ggggcgaacccgccccgcgacacctcgcgctcccgctga
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