Jatropha curcas (Barbados nut): 105628123
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Entry
105628123 CDS
T03922
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03022
Basal transcription factors
jcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105628123
09124 Replication and repair
03420 Nucleotide excision repair
105628123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105628123
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105628123
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105628123
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105628123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Tfb4
IBR
Motif
Other DBs
NCBI-GeneID:
105628123
NCBI-ProteinID:
XP_012064858
LinkDB
All DBs
Position
Unknown
AA seq
415 aa
AA seq
DB search
MSNSEKKRLNGETGEEDDDEDDVDGDLDAWERTYTDERSWEALQEDESGLLRPIDNKAIY
HAQYRRRLRALSATATTARIQKGLIRFLYIVVDLSRAAGEMDFKPSRMVVIAKHVEAFVR
EFFYQNPLSQIGLVTIKDGVAHSLTELGGSPESHIKALMGKLECSGDSSLQNALDFVRVY
LDQIPSYGHREVLILYSALSTCDPGDIMDTIQKCKKSKIRCSVIGLSAEMFICKHLCRET
GGLYSVAMDEGHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAEGSVSICSCHKEAKV
GEGYICPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPITPFDEVSLRQNELHNKL
PKTCFGCQQNLVNPGNKPGPCVACPKCKQYFCLDCDIYIHESLHNCPGCESFRHS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacagtgaaaagaaacgattaaatggagaaactggtgaagaggatgacgatgaa
gatgatgtagatggtgatcttgatgcgtgggagagaacttacactgatgagcggtcgtgg
gaagctttacaagaagatgagtctggtcttcttcgtcctatagacaataaggccatctac
catgctcagtatcgccgccgccttcgtgctctgtccgccactgcaaccacagctcgtatc
caaaagggtctcattcgctttctctacattgttgtcgatctctctagagcagcaggagag
atggattttaaaccaagtagaatggttgtgattgcaaaacatgttgaagcctttgttagg
gagtttttttatcagaatccacttagtcagattggtttggtgactattaaagatggggtt
gcacattctttaacagagcttggtggaagtcccgagtctcacattaaggctttgatgggc
aagttggaatgttcaggtgattcctcactacaaaatgctctagattttgtccgtgtatat
ctagatcaaattccatcatacggtcatcgcgaagttctcatcttgtattcagctctgagt
acctgtgatcctggagatataatggacactatccagaaatgtaagaaatctaaaattagg
tgctcagttattgggctttctgcagagatgtttatatgcaaacatctttgtcgagaaact
ggtggattatactctgttgctatggatgagggccattttaaagagttaatactggagcat
gcaccaccacctccagcaatagcagaatttgcaattgctaacttgatcaagatgggtttc
ccacaaagggcagcagagggttctgtctcaatttgttcttgtcataaagaagctaaagtt
ggtgagggttacatttgcccaagatgcaaggcacgtgtatgtgagcttcctactgaatgc
cgtatttgtggattaacacttgtttcttcaccgcatttggcaaggtcgtatcatcacctc
ttccctattacaccatttgatgaggtgtctctgcgccaaaatgaactacataacaagcta
cctaaaacttgttttggctgccaacagaacctcgtcaatcctggcaacaaacctggccct
tgtgttgcttgcccaaaatgcaagcagtacttctgccttgactgtgatatttatattcat
gagagcttgcataactgcccaggctgtgagagtttccggcattcataa
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