Jatropha curcas (Barbados nut): 105629679
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Entry
105629679 CDS
T03922
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X3
KO
K14328
regulator of nonsense transcripts 3
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105629679
03015 mRNA surveillance pathway
105629679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105629679
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105629679
mRNA cycle factors
P-body specific factors
105629679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
105629679
NCBI-ProteinID:
XP_012066696
LinkDB
All DBs
Position
Unknown
AA seq
509 aa
AA seq
DB search
MKGQSEKTKVVVRHLPPTISQDMFLEQINVAFAGRYNWVSFRPGKNSQRHQSNSRAYIDF
RSPEDVIEFAEFFNGHLFVNEKGTQFRAVVEYAPSQRVPKQWSKKDGREGTILKDPAYLE
FLELISKPAENLPSAEIQLERREAERAGIIKDAPIITPLMDFVRQKRAAKTGSRRILGNG
KLSRRAGTSGSPGSSSSKRSSEKKRVSTTMYVLRDTAKSTSGKDKSTYILVPKRDDQQLS
DKAVTLGTASGAEVLEDESGASGITDAGKKKILLLKGKEKEISDNAASFDKNVISSAVKQ
NQRREASGRIIRSILLNKESRQNQSSGIQSEHQMQTSNSEKEKRPPRPPHVQLVLNTNGA
LDDKVVINDLHGFSGEKQEKRTRNKDRPDRVVWTPLRRSDGSYASDESLSLSASQSTQSG
VDSSQGNLGDLKVDPSNSRSGEVKTLTGRGSHSSLDNGSHKHFGRRGPSHPVRDADGSSG
EGKASKRGGASGYGSHEKQVWVQKSSSGS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtcaatctgagaagacaaaggtggtggtgcgccacttgccgcctacgatttct
caggacatgtttttggagcaaatcaacgttgctttcgctgggcgttataattgggtatcg
ttccgtcctggcaagaacagtcagaggcatcaatccaattctagagcctacattgacttc
agaagcccagaagatgttattgagtttgcagagttctttaatggtcatctctttgtcaat
gagaagggcacacagtttagagctgtggttgagtatgctccctcacagcgtgttccaaag
cagtggtctaagaaagatggtcgtgaaggcaccatcctaaaagatcctgcatatctggag
ttccttgaattgatatcaaagcctgctgagaatcttcccagtgctgagatacaattggaa
agaagagaagctgaaagagccggtattataaaagatgctcctattattacacccttaatg
gactttgtccggcagaaaagagctgcgaagactggatctcggagaatattgggtaatggg
aaactcagtagaagggctggtacaagtggaagtcctggttcatcctcatccaagcgaagt
tctgaaaagaagagagtttcaaccactatgtatgttttaagggacactgcaaaaagcaca
agtggaaaagacaaatcaacttacattttggttccgaagcgagatgatcagcagctttct
gataaagctgttactttaggtactgcatctggagctgaagttttggaagatgaaagcgga
gcttctggaattacagatgctgggaaaaagaaaattcttcttctgaaagggaaagagaag
gagatttcagataatgcagcatcatttgataaaaatgtgatcagttctgcagtcaaacag
aaccaacgacgtgaggccagtggcaggataatcagaagcatacttttaaacaaggaatca
cgtcaaaatcaatcttctgggattcagtctgagcatcaaatgcaaacatccaattcggaa
aaggaaaaacgtcctccccgtcctccacatgtgcaattggttttgaacacgaatggagct
ttggatgataaggttgttattaatgatttgcatggtttttctggtgagaagcaggaaaag
cgcacaagaaataaggataggcctgatcgagttgtatggactcctcttcgacgatcagat
ggatcatatgcaagtgatgaatcgttgtcattgtctgcatcacaatctacacaatcaggc
gtagattcttctcaaggaaatcttggagatctaaaggttgacccatcaaattcaaggagt
ggagaagttaaaaccctcactggacgtggcagtcattcttctttagacaatggatcacat
aaacattttggtcgtcgaggaccatcacacccagtgagggatgctgatggctcatctggc
gaggggaaggcttcaaagagaggtggtgcttctggttatggttcccatgagaagcaagtg
tgggttcaaaagtcaagttctggttcttag
DBGET
integrated database retrieval system
