Jatropha curcas (Barbados nut): 105642304
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Entry
105642304 CDS
T03922
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105642304
03015 mRNA surveillance pathway
105642304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105642304
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105642304
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105642304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
T4_baseplate
TniB
Ribosomal_L38e
Motif
Other DBs
NCBI-GeneID:
105642304
NCBI-ProteinID:
XP_012082496
UniProt:
A0A067KAE4
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MADTSETPATTTERQSKPQAAEIIKWGDVEDEEETASTSEDKVASQLEDKLTIDDSEKVD
KFLEEPQDSNIQAVTAGDTPYTSATTFEDLNLTPELLKGLYVEMKFKKPSKIQAISLPMI
LTPPYKDLIAQAHNGSGKTTCFVLGMLSRIDPNARRPQALCICPTRELSIQNLEVLRKMG
KYTGITSECAVPMDSANDRPRSRPPIFAQVVIGTPGTIKRLMSQKKLSVTDMRVLVFDEA
DHMLAKDGFQDDSLRIMKDIERVNNHCQILLFSATFDETVKNFVSRIVRKDYNQLFVKKE
ELSLDAIKQYKVYCPDELAKILVIKDRILEVGEKLGQTIIFVSSKRSAGMLHKALVELGY
EVTTIHGALTHEDRDKIVKEFKDGLTQVLISTDLLARGFDQQQVNLVINYDLPVKFESPN
EPNYEVYLHRIGRAGRFGRKGAVFNFVMDDRDRMIMEKIETYFGTQVAEVPSWDSEEDFK
VALKAAGLL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcggataccagcgaaacccccgccacaactaccgagcgacaaagcaaacctcaggcg
gcggagataataaagtggggtgatgtagaagatgaagaggaaacagcctccacttcagag
gataaagttgcctcccaactcgaggataaattgactattgacgatagcgaaaaagttgac
aaatttctcgaagagccacaagattcgaatatccaagctgttacagctggagatactcca
tatacttctgcgactacatttgaagatttaaacttgacgccagagctcttgaaggggttg
tatgtggagatgaaattcaagaaaccaagcaaaattcaagctataagtcttccgatgatc
ttgactccgccatacaaagatttgattgcccaagcacataatggttctggtaagacgact
tgttttgtgcttggcatgttgagtcgtattgatcctaatgccagaagaccacaagccctt
tgtatctgtccaacaagagagttgtctattcagaatttggaagttcttcggaagatggga
aagtacactggaattacttcagaatgtgctgtgccaatggacagtgcaaatgacagacca
agatcaaggccacctatatttgcacaagtagttattggaactcctggaacaataaaaagg
ctgatgtctcaaaagaaattgagcgtcactgatatgcgagttctagtttttgatgaggct
gatcacatgctggccaaggatggatttcaagatgattccttgagaataatgaaggacatt
gaaagagtcaataatcactgccagattcttttgttttctgctacatttgatgagaccgtc
aagaattttgtatcaaggattgtgaggaaagattacaatcaactctttgtgaagaaagaa
gagttatcattagatgcaataaagcagtacaaggtgtattgtcctgatgagttagccaag
attctagtcataaaagacagaatacttgaagtcggagaaaagttggggcagacaattatt
tttgtaagctcaaaacgtagtgcaggcatgttgcacaaggcacttgttgagttaggttat
gaagtgaccaccattcatggtgcacttactcatgaagatcgagacaagatagtcaaagag
ttcaaagatggtttgactcaagttctgatatcaactgaccttcttgctcgaggctttgat
caacagcaggttaatttggttatcaattatgatcttcctgtgaagttcgagagtccaaat
gaacctaattatgaggtttacttgcataggattggtagagcagggcgttttggccgcaaa
ggagctgtcttcaattttgtgatggatgatagggataggatgataatggaaaaaattgaa
acatatttcgggacccaagtcgccgaggtaccatcctgggatagtgaggaggattttaag
gttgccttgaaagcggctggcttgctgtga
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