Jonesia denitrificans: Jden_1935
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Entry
Jden_1935 CDS
T00972
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jde
Jonesia denitrificans
Pathway
jde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Jden_1935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jde03400
]
Jden_1935
Enzymes [BR:
jde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Jden_1935
DNA repair and recombination proteins [BR:
jde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Jden_1935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACV09577
UniProt:
C7R019
LinkDB
All DBs
Position
complement(2120860..2124510)
Genome browser
AA seq
1216 aa
AA seq
DB search
MNLSGLLPSLQADTDFTHAVELARHGAPANIVASMGVRPALLAAMVTATRSRDNGPQRRG
PIVVVTATGREADELAQALRCYVPTDAVATLPAWETLPHERLSPRSDTVARRLAVFRRLA
HPSAEGVTGDIDVLTVPVRALLQPVVQGLGDLTPVRLQVGDSVDLTDVAHQLADAAYARV
DMVERRGEFAVRGGILDVFPPHEAHPLRVDFFGDEVDDITYFAVADQRSLDPAPNGVWAP
PCRELLLTAQIRQRAHDLVPQLPGAAEMLEKMSQGIAVEGMESLTPVLVDTMVPVLDMLP
DDVTVVVHEPERVRRRAHDLVATTDEFLAAAWTGAAAGGSIPLDLSPASFLTLEDVRDRA
AARGLTWWNMASFGLGDTANNAGSPEPGGQNTLAGAGGLADFDDDASTIVRIPTRDVHSY
RGDFSKALDDVRGLQVAGWRLVMTSEGHGPAQRMVEQLAGLDVPARYTETLTEEPEPGIV
HVVPAAAGPGFVATDLQLAVFSDHDLAGRAGTTTKDMRKMPSRRRNVVDPLQLKAGDFVV
HEQHGVGKFVELVQRTLGAPGNQATREYLVIEYAASRRGQPGDRLFVPMDQLDQVTKYTG
GEQPSVNKMGGADWQKTKAKARKAIKQIAGELIRLYSARMATQGFAYSPDTPWQRELEDA
FAYIETPDQLATIDEVKADMEKMIPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAILV
PTTLLVQQHYDTFSERYAGFPVTVKALSRFQSDKESQEVISGISEGTVDVVIGTHRLLSG
SIHFKDLGLVVIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTL
ATPPEERHPVLTYVGGYDDKQVIAAVRRELLREGQVFYVHNKVETIESTAARIMDLVPEA
RVRVAHGRMNEHELEQVILDFWEKRFDVLISTTIIETGLDVSNANTLIVERSDVMGLSQL
HQLRGRVGRGRERAYAYFFFPPEKPLTETAHERLQTIAANTELGSGMQVAMKDLEIRGAG
NLLGGEQSGHIAGVGFDLYMRMVGEAVADFRGEKPEETPEVQIELPIDAHLPHDYVGHER
LRLEAYRKIAAATSAQQLADVHEELVDRYGQPPAEVANLFAVATFRNEVRDVGLRDVTVQ
GKFVRFAPVELPESATLKLKRLYPGSMIKPVVRTVLVPYPTQARIGGQPLRGEELLDWAR
RFISTIIAPPVVSKAD
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaatctctcgggactgctccccagcttgcaagcggacaccgacttcacccacgccgtg
gaactcgcccgccacggcgcaccagcaaatatcgtggcaagtatgggggtgcgccccgcc
ctactcgcagcgatggtcacggcaacgcgctcgcgggacaacgggccacagcgtcgtgga
ccaattgtcgtggtgaccgcgacagggcgtgaggctgatgagttggcgcaggcgcttcgg
tgctatgtgcccaccgatgcggtggccacgttgccagcgtgggagacgttgccacacgag
cggctttctcctcgctcagatacggtggctcgccgtcttgctgtgttccgcaggctcgca
caccccagcgccgagggcgtgacaggggacatcgatgtgttaacagtgccggtgcgtgca
ctgttgcaacccgtagtccaggggctcggggatttgaccccggttcgccttcaagtgggc
gacagcgttgacctgactgatgtggcccaccagcttgctgacgcggcttacgctcgtgtg
gacatggtggagcgccgtggggagttcgccgtccgcggggggatccttgatgtgttccct
cctcacgaagctcacccactgcgcgtcgatttctttggtgacgaggtcgacgacatcacc
tattttgcggtggcagaccaacgatctcttgatcctgcccccaacggtgtgtgggcacca
ccgtgccgtgaacttctgctcaccgcgcagattcgtcagcgtgcccacgaccttgtcccc
caacttcccggggcggcagaaatgttggaaaagatgtcccagggcattgccgtggaagga
atggagtcactgactccggtccttgtggacaccatggtgccggtgttagacatgcttcct
gatgatgtgaccgtggtggttcacgaaccggaacgggtgcgtcgtcgggcccacgattta
gtggcaacaacagacgagttccttgctgcagcatggacgggtgctgccgctggtggttcg
attccactagatctgtcacccgcatcgttcctcacgttggaggacgttcgcgaccgcgcc
gcagcgcgcggtttgacctggtggaacatggcgtctttcgggttaggcgacactgctaac
aacgcaggttcccctgagcctggcgggcagaacactctcgcaggtgccggtggccttgcg
gactttgatgatgacgcatcgaccattgtgcggatccccacccgcgatgttcattcctac
cgtggtgacttcagtaaagcccttgacgatgtgcgtggcttgcaggtggctggctggcgg
ttggtgatgacttcagaggggcatgggccagcgcaacgcatggtggagcaacttgccgga
cttgatgtgccagcgcggtacaccgaaaccctcacggaggaaccagaaccagggattgtc
catgttgttccggcagcagcagggcctgggtttgtggccacagacctccagcttgcggtg
ttctctgaccatgaccttgctggccgggcgggcaccacaacaaaagacatgcggaagatg
ccgtcacggcggcgaaacgtggtggatccgctccagctcaaagcgggggattttgttgtc
catgagcagcacggtgtgggcaagttcgttgaacttgtgcaacgcaccttaggggctcct
ggaaaccaggctacccgcgaataccttgtcattgagtatgcggcatcgcggcgcgggcaa
cccggtgaccggttgtttgtgccaatggatcaactggaccaggtgaccaagtacaccggt
ggtgagcaaccaagcgtcaacaaaatgggtggcgctgactggcaaaaaactaaagcgaaa
gcacgcaaagcgatcaagcagatcgctggagaattgatccgcctgtactcagcgcggatg
gccacccaagggtttgcttattcaccggacaccccttggcagcgagagttggaagacgcg
ttcgcctatattgaaaccccggaccaactcgccaccattgacgaggtcaaagctgacatg
gaaaagatgatccctatggaccgtctgatctgcggtgatgtgggttatggaaaaacggaa
atcgcggtacgtgctgcgtttaaggcggtgcaagacggtaaacaggtggcgatcctcgtg
ccaacaaccctgcttgttcagcagcactatgacacgttctctgaacggtatgcagggttc
cctgtgacagtgaaagcgttgtcgcgtttccaaagtgacaaggaatcacaagaggtcatc
tcagggatctcagagggcactgtcgatgtggtgatcgggacccaccggctgctttcaggg
tcgatccacttcaaggaccttgggcttgtggtcattgacgaggaacaacgttttggggtg
gaacacaaggaaacgttgaagcaactgcgcacaaacgtggatgtgttggctatgtccgcg
accccgatcccgcgcaccttggaaatggcggtgaccgggatccgggaaatgtcgacgttg
gccacaccaccagaggagcgccacccggtcctcacttacgtgggtggttatgacgataag
caagtcattgctgcggtgcgacgcgaattgttgcgtgaagggcaagtgttttacgtccac
aacaaagtggaaaccatcgaatcaacggctgctcggattatggatctggtgccagaagcg
cgtgttcgggtggctcacggacggatgaatgagcacgagctggaacaagtcatccttgat
ttttgggagaaacggtttgatgtcctcatctccacgaccatcattgaaaccggcctggat
gtgtcgaatgcgaacacactcattgttgaacgctccgatgtgatgggtctgtcacagctg
caccagctgcgagggcgggtggggcgcgggcgggaacgtgcttacgcatacttcttcttc
cctccagagaaacctctgacagaaactgctcacgaacgcctccaaacgatcgctgcgaac
acggagctgggttcaggcatgcaggtggccatgaaggacctggaaattcgtggggcaggt
aacctccttggcggggaacaatcaggtcacattgccggggttgggtttgacctgtacatg
cgcatggtgggtgaagcggttgctgacttccggggggagaaaccagaagaaacccctgag
gtgcaaatcgaacttcctatcgatgcgcacctgccccacgactatgtggggcatgaacgg
ttgcgtcttgaggcgtaccgcaagatcgctgcggccacgagtgcccaacagcttgccgat
gtgcacgaggagttggtggaccggtacgggcaaccacctgcggaggtggctaacctcttc
gcggtggcgacgttccgcaatgaggtgcgtgacgtagggttgcgtgatgtgactgtgcaa
ggaaagttcgtccggtttgccccggtggagctgccagaatcagcgacgttgaaactgaaa
cggttgtacccgggctcgatgatcaaaccggtggtgcgcacggtgctggtgccatacccc
acccaggcgcgcatcggtgggcagcctttgcgtggtgaggaactcctggactgggcgcgc
cgttttatctcgacaatcattgcgccgcctgtggtgtcgaaagcagactga
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