Candidatus Jettenia sp.: L3J17_13340
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Entry
L3J17_13340 CDS
T07848
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
jet
Candidatus Jettenia sp.
Pathway
jet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3J17_13340 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jet03019
]
L3J17_13340 (rnr)
03016 Transfer RNA biogenesis [BR:
jet03016
]
L3J17_13340 (rnr)
Enzymes [BR:
jet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L3J17_13340 (rnr)
Messenger RNA biogenesis [BR:
jet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3J17_13340 (rnr)
Transfer RNA biogenesis [BR:
jet03016
]
Prokaryotic type
tRNA degradation factors
L3J17_13340 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
DUF1918
Motif
Other DBs
NCBI-ProteinID:
UJS16882
LinkDB
All DBs
Position
complement(3124129..3126243)
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AA seq
704 aa
AA seq
DB search
MTAAELAEHFKIDDTEYQAFCDLLYDLEFSGEVVKIKQKQYADPKKVHLMVGTLECNPRG
FGFVVPVKKGAGTGKDVYVNEEDMGSAMHGDLVVVRLPATAQIPKKKFEKKRGTSGQIVN
VLKRVNELVVGTFEKTKRMRFVAPDNPRLFKDIYIAEDVSKGAEPGDKVVAQITEWPSRH
LNPEGEITEVLGKEGDPKVDLRSIIYQFKLPHTFNQKILQETKHIPHYVSQKEIEDRLDL
RKNLMITIDPEDAKDFDDAVSLEKNKHGDWLLGVHIADVSHYVKPDTAIDDEARYRGTSV
YLPGEVIPMLPEALSNNICSLREGEDRLTKSVIMTLDHRGRLIKAEIKHSIIKVTKRLTY
NQATAILNNENTIRIADDAEDMLRNMAHLAQLLFENRLNRGAIELDLPEVSLKLDDHGYV
KDVEKVEKDISHKLIEECMLLANETVATFMFEKKMPLLCRTHPEPDEEDMWEFASFIRGL
EQTKIDPFKSKQLQKLLDKIRGKPEAYTINLVLLKSMKQAIYAAGEGRHFALALDHYTHF
TSPIRRYPDLIVHRILDQYFSGELSSAVTQNLWLTHLTEWAKHCSITERRADDAEREIVK
LRLLRFFENQVGNTFEGVITGIQEFGFFVQLNKYLLEGLVHIRTLADDIYRIDKKNMALI
GTRRKRMYRIGEVVKVKIYKIDFLKREVDFIHCNNQKGEQDYIS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgactgccgctgagctggcagaacattttaaaattgatgatacagaataccaagcattt
tgtgatcttttgtatgatctggaattttccggtgaagttgtaaagattaaacaaaaacag
tacgctgatcccaaaaaggtacatttaatggtaggcacattagagtgcaacccaagggga
tttggttttgttgttccggttaaaaagggcgctggcactggtaaagatgtttacgtcaat
gaggaagatatgggttctgctatgcatggagatctcgtggtagtacgattacccgcaacc
gcccagattcccaaaaaaaaatttgaaaaaaaaagaggtacatcaggacaaatcgttaac
gtactaaaacgtgtaaatgaattggtagtaggcaccttcgagaaaacgaaacggatgcgg
tttgttgctcctgacaacccaaggctatttaaagatatttatattgcagaagatgtttca
aagggtgcggaacccggtgacaaagtagttgctcaaattaccgaatggccgtccagacac
cttaatcctgaaggagaaataactgaagtactgggaaaagaaggagatcccaaggttgac
ctccgttccattatctatcaattcaaactaccgcataccttcaaccaaaagatactacag
gagacgaaacatattcctcactacgtctctcagaaagaaatcgaggacagactcgattta
cgcaaaaatctcatgattacgatcgatcctgaagatgccaaagattttgatgatgcagta
tctctcgaaaaaaataagcacggagactggttactcggtgtacacattgccgatgtatca
cattatgtaaaacccgatacagctattgatgacgaagcccggtatcggggcaccagtgtc
tatttaccaggagaggtgatccccatgcttcctgaagcgctatcgaacaatatctgtagt
ttgagagaaggagaggaccgactcacgaaaagtgttattatgacactcgatcataggggg
cgtcttataaaggctgagattaaacactccatcattaaggtaaccaaacgattaacatac
aatcaagccactgccattcttaataacgaaaataccatacgcatagctgatgatgccgaa
gatatgttgcgtaatatggcacacctcgctcaattactttttgaaaatagactcaatcga
ggagccatagagttagatctacctgaagtatcactcaaattagatgatcatggttatgtt
aaagatgtagaaaaggttgaaaaagatatctctcataaattgatagaagaatgtatgctc
ctggcaaacgagacggtagcaacgttcatgtttgaaaaaaagatgccactcttgtgccgt
actcatccggaacccgacgaagaagatatgtgggaatttgcaagttttattcgtggatta
gaacagacaaaaatagacccctttaaaagtaaacaattacaaaagttattagataaaata
cggggaaaacctgaggcttatacgatcaatctggtacttttaaaatctatgaaacaagca
atttatgcggcaggagaaggcaggcattttgcacttgcgctggatcactatactcacttt
acctcacctatacgccgctatccagatttaattgttcatagaattttagatcaatatttt
tcaggcgagctatcgtctgcagtgacacagaacttatggttgacacatttaactgaatgg
gcaaaacattgctctataactgaacggagggcggatgatgccgagagggaaattgttaaa
ttacgattactccggttctttgaaaatcaggttggaaacacctttgagggtgtcattact
ggtattcaggaatttggattttttgttcaactcaataaatacctcctggaaggacttgtt
cacattcgcaccctggcagacgatatctatcgaatagataaaaagaatatggcgctcatc
ggcacccgacggaaacgaatgtatcggatcggagaagttgtaaaagtaaagatctataag
atcgactttttaaaacgagaagttgattttatccactgcaataatcaaaaaggagaacaa
gattatatttcataa
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