Jiella pelagia: OH818_12770
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Entry
OH818_12770 CDS
T08667
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
jie
Jiella pelagia
Brite
KEGG Orthology (KO) [BR:
jie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OH818_12770 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jie03400
]
OH818_12770 (ligD)
Enzymes [BR:
jie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OH818_12770 (ligD)
DNA repair and recombination proteins [BR:
jie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OH818_12770 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WAP70792
LinkDB
All DBs
Position
2446505..2448853
Genome browser
AA seq
782 aa
AA seq
DB search
MKPRKKEKRENWLLIKEKDELARPDEDGEAFLSGEMTSITTGRSMEEIGAEEGGEGGDQW
SSDATRGKGGRTSASGRRKGKAETSKTAAGSSAKTRSTTKKKASGTAKAVSLDDLAKTYG
KPQLATLVDDPPKAEGWLHEIKFDGYRLLALVGGGEARLLTRNGKNWTEKFGRLAKTFEK
LGVTDGVFDMEAVVLDDHGRSDFQMLQNVLSEETDRGIVAFVFDCLHLDGEDLTSEPLTT
RKERLKTVLDGQAKQAKSILRYSDHIEGKGDQMIARSCSMGLEGVISKKADAPYRAGRTK
SWLKSKCIKRQEFVIAGFTKAAGGARAIGALHLGYSGDDGLVYAGKVGTGFSDVSAQALR
DRLDKMTRKTPPVENLSATEKRGATWVTPTLLCEIAFTEWTSEGKIRHPSFKGLREDKPA
EEVTRETPQDEEEAVEEAASEAAGTDETSKRSPKKRSSAKPSKAAASKAEPAAKSAPVAK
KKRSDKPISVAGVTITHPDRPIFGEEDGPTKGDLAEYYGKVAKLILADIAGHPVSILRCP
GGIGEECFFQRSAGKGWGAEIRPVDVTHDGKTTEYFHVDDEKGLLELAQMGGIELHPWAS
SVGKVDVPDRLVFDLDPDEGIPFEAVKLAARDLGNRLDGLGLDSFVKCTGGKGLHVVVPI
TPRREFPEIKAFAAAFAEKMVRDAPKAYVATMSKARRKGRIFIDYFRNDHAATSIADYSV
RARPGARCAVPLDWEELDALETADAFTMERVLARIAAGEAYERPTMRQSITKKMMGALGL
KG
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgcgaaagaaggaaaagcgcgagaactggctgctcatcaaggagaaggacgaa
ctcgcccggccggacgaggacggcgaggcgtttctttcgggcgagatgactagcatcacg
accggccgctcgatggaggagatcggcgccgaggaaggcggcgagggcggcgaccagtgg
tcgagcgacgccacccgcggcaagggcggcaggacatccgcatccgggcggcgcaagggc
aaggcggagacatcgaagacggcggcagggtccagcgcgaagacaaggtccaccacgaag
aagaaggcaagcggaaccgcgaaggccgtctcgctggacgacctcgccaagacctacggc
aagccgcagctcgcgaccctcgtcgacgacccgcccaaggccgagggctggctgcacgag
atcaagttcgacggctatcgcctgctcgccctggtcggcggcggcgaggcgcggctgctc
acccgcaacggcaagaactggacggagaaattcggccgcctcgcgaaaacgttcgaaaag
ctcggcgtcaccgacggggtcttcgacatggaggctgtggttctcgacgatcacggtcgc
tccgacttccagatgctgcagaacgtcctgtccgaggagacagaccgggggatcgtcgcc
ttcgtcttcgactgcctgcatctcgatggcgaggacctgaccagcgagccactgacgacc
cgcaaggagcggctgaagacggttctcgacggccaggccaagcaggcaaagtcgatcctg
cgctattccgaccacattgagggcaagggcgaccagatgatcgcccgctcctgctccatg
gggctcgagggcgtgatctcgaagaaggccgacgcgccctatcgcgccggccggacgaag
agctggctcaagtcgaaatgcatcaagcgtcaggaattcgtcatcgccggcttcaccaag
gcggccggcggggcgcgggcgatcggcgctctccatctcggctattcgggcgatgacggc
ctcgtctatgccggcaaggtcggcaccggcttttccgacgtctcggcgcaggcgctgcgc
gaccggctggacaagatgacccgcaagacgccgccggtggagaacctgtccgccactgag
aagcgcggcgccacctgggtgacgccgacgctgctgtgcgaaatcgccttcaccgaatgg
acgagcgagggaaagatccgccacccctccttcaagggcctgcgcgaggacaagccggcc
gaggaggtgacgcgagagacgccgcaggacgaggaggaagcggtcgaggaagcggcaagc
gaggcagccggcaccgacgagacgtcgaagcgctcgccaaagaagcgctcctccgcaaag
ccctcgaaggcagcggcatccaaggcagagccggcggcgaagtccgcgcccgtggcgaag
aagaagcgctccgacaagccgatcagcgtcgccggcgtgaccatcacccacccggaccgg
ccgatcttcggcgaggaggacgggccgaccaagggcgacctcgcggaatattacggcaag
gtggcaaagctgatcctcgccgacatcgccggccatccggtgtcgattctgcgctgtccc
ggcggcatcggcgaggaatgcttcttccagcgttccgccggcaagggctggggcgcggag
atcaggccggtcgacgtcacccatgacggcaagaccaccgagtatttccacgtcgacgac
gagaaggggctgctcgaactcgcccagatgggcggcatcgagctgcacccctgggcctct
tcggtgggcaaggtcgatgtgccggaccgcctcgtcttcgatctcgaccccgacgagggc
atccccttcgaggcggtgaaactcgccgctagggatctcggcaaccggctggacgggctc
ggcctcgacagtttcgtcaaatgcaccggcggcaaggggctgcacgtggtggtgccgatc
accccgcgccgcgagttccccgagatcaaggcgtttgccgcggcgttcgccgaaaagatg
gtgcgcgatgcgccgaaggcctatgtcgcgacgatgtcgaaggccaggcgcaagggccgg
atcttcatcgactatttccgcaacgaccatgcggcgacctcgatcgccgactattcggtg
cgggcccggcccggcgcccgctgcgccgtgccgctcgactgggaggaactcgacgcgctc
gagaccgcagacgcgttcacgatggagcgggtgctcgcccgcatcgcggcgggcgaagcc
tatgaacgtccgaccatgcgccagtcgatcaccaagaagatgatgggcgcgctcgggctg
aagggctga
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