KEGG   Jiella pelagia: OH818_12770
Entry
OH818_12770       CDS       T08667                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
jie  Jiella pelagia
Brite
KEGG Orthology (KO) [BR:jie00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OH818_12770 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jie03400]
    OH818_12770 (ligD)
Enzymes [BR:jie01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OH818_12770 (ligD)
DNA repair and recombination proteins [BR:jie03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OH818_12770 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: WAP70792
LinkDB
Position
2446505..2448853
AA seq 782 aa
MKPRKKEKRENWLLIKEKDELARPDEDGEAFLSGEMTSITTGRSMEEIGAEEGGEGGDQW
SSDATRGKGGRTSASGRRKGKAETSKTAAGSSAKTRSTTKKKASGTAKAVSLDDLAKTYG
KPQLATLVDDPPKAEGWLHEIKFDGYRLLALVGGGEARLLTRNGKNWTEKFGRLAKTFEK
LGVTDGVFDMEAVVLDDHGRSDFQMLQNVLSEETDRGIVAFVFDCLHLDGEDLTSEPLTT
RKERLKTVLDGQAKQAKSILRYSDHIEGKGDQMIARSCSMGLEGVISKKADAPYRAGRTK
SWLKSKCIKRQEFVIAGFTKAAGGARAIGALHLGYSGDDGLVYAGKVGTGFSDVSAQALR
DRLDKMTRKTPPVENLSATEKRGATWVTPTLLCEIAFTEWTSEGKIRHPSFKGLREDKPA
EEVTRETPQDEEEAVEEAASEAAGTDETSKRSPKKRSSAKPSKAAASKAEPAAKSAPVAK
KKRSDKPISVAGVTITHPDRPIFGEEDGPTKGDLAEYYGKVAKLILADIAGHPVSILRCP
GGIGEECFFQRSAGKGWGAEIRPVDVTHDGKTTEYFHVDDEKGLLELAQMGGIELHPWAS
SVGKVDVPDRLVFDLDPDEGIPFEAVKLAARDLGNRLDGLGLDSFVKCTGGKGLHVVVPI
TPRREFPEIKAFAAAFAEKMVRDAPKAYVATMSKARRKGRIFIDYFRNDHAATSIADYSV
RARPGARCAVPLDWEELDALETADAFTMERVLARIAAGEAYERPTMRQSITKKMMGALGL
KG
NT seq 2349 nt   +upstreamnt  +downstreamnt
atgaagccgcgaaagaaggaaaagcgcgagaactggctgctcatcaaggagaaggacgaa
ctcgcccggccggacgaggacggcgaggcgtttctttcgggcgagatgactagcatcacg
accggccgctcgatggaggagatcggcgccgaggaaggcggcgagggcggcgaccagtgg
tcgagcgacgccacccgcggcaagggcggcaggacatccgcatccgggcggcgcaagggc
aaggcggagacatcgaagacggcggcagggtccagcgcgaagacaaggtccaccacgaag
aagaaggcaagcggaaccgcgaaggccgtctcgctggacgacctcgccaagacctacggc
aagccgcagctcgcgaccctcgtcgacgacccgcccaaggccgagggctggctgcacgag
atcaagttcgacggctatcgcctgctcgccctggtcggcggcggcgaggcgcggctgctc
acccgcaacggcaagaactggacggagaaattcggccgcctcgcgaaaacgttcgaaaag
ctcggcgtcaccgacggggtcttcgacatggaggctgtggttctcgacgatcacggtcgc
tccgacttccagatgctgcagaacgtcctgtccgaggagacagaccgggggatcgtcgcc
ttcgtcttcgactgcctgcatctcgatggcgaggacctgaccagcgagccactgacgacc
cgcaaggagcggctgaagacggttctcgacggccaggccaagcaggcaaagtcgatcctg
cgctattccgaccacattgagggcaagggcgaccagatgatcgcccgctcctgctccatg
gggctcgagggcgtgatctcgaagaaggccgacgcgccctatcgcgccggccggacgaag
agctggctcaagtcgaaatgcatcaagcgtcaggaattcgtcatcgccggcttcaccaag
gcggccggcggggcgcgggcgatcggcgctctccatctcggctattcgggcgatgacggc
ctcgtctatgccggcaaggtcggcaccggcttttccgacgtctcggcgcaggcgctgcgc
gaccggctggacaagatgacccgcaagacgccgccggtggagaacctgtccgccactgag
aagcgcggcgccacctgggtgacgccgacgctgctgtgcgaaatcgccttcaccgaatgg
acgagcgagggaaagatccgccacccctccttcaagggcctgcgcgaggacaagccggcc
gaggaggtgacgcgagagacgccgcaggacgaggaggaagcggtcgaggaagcggcaagc
gaggcagccggcaccgacgagacgtcgaagcgctcgccaaagaagcgctcctccgcaaag
ccctcgaaggcagcggcatccaaggcagagccggcggcgaagtccgcgcccgtggcgaag
aagaagcgctccgacaagccgatcagcgtcgccggcgtgaccatcacccacccggaccgg
ccgatcttcggcgaggaggacgggccgaccaagggcgacctcgcggaatattacggcaag
gtggcaaagctgatcctcgccgacatcgccggccatccggtgtcgattctgcgctgtccc
ggcggcatcggcgaggaatgcttcttccagcgttccgccggcaagggctggggcgcggag
atcaggccggtcgacgtcacccatgacggcaagaccaccgagtatttccacgtcgacgac
gagaaggggctgctcgaactcgcccagatgggcggcatcgagctgcacccctgggcctct
tcggtgggcaaggtcgatgtgccggaccgcctcgtcttcgatctcgaccccgacgagggc
atccccttcgaggcggtgaaactcgccgctagggatctcggcaaccggctggacgggctc
ggcctcgacagtttcgtcaaatgcaccggcggcaaggggctgcacgtggtggtgccgatc
accccgcgccgcgagttccccgagatcaaggcgtttgccgcggcgttcgccgaaaagatg
gtgcgcgatgcgccgaaggcctatgtcgcgacgatgtcgaaggccaggcgcaagggccgg
atcttcatcgactatttccgcaacgaccatgcggcgacctcgatcgccgactattcggtg
cgggcccggcccggcgcccgctgcgccgtgccgctcgactgggaggaactcgacgcgctc
gagaccgcagacgcgttcacgatggagcgggtgctcgcccgcatcgcggcgggcgaagcc
tatgaacgtccgaccatgcgccagtcgatcaccaagaagatgatgggcgcgctcgggctg
aagggctga

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