Janibacter limosus: EXU32_02140
Help
Entry
EXU32_02140 CDS
T05853
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jli
Janibacter limosus
Pathway
jli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EXU32_02140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jli03400
]
EXU32_02140 (mfd)
Enzymes [BR:
jli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EXU32_02140 (mfd)
DNA repair and recombination proteins [BR:
jli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EXU32_02140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBF45171
UniProt:
A0A4P6MNU7
LinkDB
All DBs
Position
434205..437843
Genome browser
AA seq
1212 aa
AA seq
DB search
MTSSLAPLMSAIAGLPGLADIPRHRASSDQVDIVAPTGLRAPTVALIGGDVPSDAPRLVI
TSTAREADDMAAALTELVGPDLVATFPSWETLPHERLSPRSDTVGRRLAVLRRLRHPDAT
GEGHGRPGYVIASVRAVLQPIAKGLADLEPVRLRVGDERALPEVTAALAAAAYVRTDLVE
RRGEFAVRGGILDVFPPTDESPVRVEFFGDTVDEIRCFKVADQRSSETAQELWAPPCREI
LLTDAVRERAATVAQELPGVADMLLKVAEGIAVEGMESLGPVLVDGMESILDVLPKGAGV
VLLDPERVRARAHDLVSTSEEFLQASWANAAAGNAVPVDLEGVLGTASHWTLAQAREHAL
DLDLPWWTVTPFAVDDELAAIAADMDDRVDHDNVGLRVPAQEPPHFRGNTESAVAQLAEW
SGAGWRVLVATDGAGLVARVAEVLGEADVATRTTGPDDQVELSDGVVTLVRASLGTGFVA
EEQRLAVITEADLLGSSGTGATTRDMRRMPSRRRKQVDPLQLRPGDHVVHEQHGVGSFVE
MIQRTVQGATREYLVIEYAPSRRGHPGDRLFVPTDQLDQVTRYVGGDAPPLNKMGGGDWH
KTKSRAQRHVKQIAAELIRLYSARMATPGHAFGPDTPWQRELEDAFAHVETPDQLGTIDE
VKADMEKTVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHLNTFSE
RYAGFPVTVKALSRFQTDKQAKDVLEGMASGAVDLVIGTHRILGNEVKFKDLGLVIIDEE
QRFGVEHKEQLKAMRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVG
GYEEKQVAAAIHRELMREGQVFFVHNNVSSIDRTAARIRELVPDARVEIAHGKMGEHRLE
QVVLDFWELRFDVLVCTTIVETGLDISNANTLILDRADRFGLSQLHQLRGRVGRGRERAY
AYFLYPPDKPLTETAHDRLQTIASNTDLGSGMQVAMKDLEIRGAGNLLGGEQSGHIAGVG
FDLYVRMVGEAVADFKGEGETAPAEVKIELPVDAHLPHEYIPGERLRLEAYRKLASAETE
ADLDEVIEELTDRYGEPPEPVRNLVEVARLRIVVRSAGLTDVVAQGNNVRFAPAQLRESK
QLRLSRLYPRSSYKEGTGTVLVPKPMTARIGGSPLRDTAVLSWATDLIRQVMLDDVIVDT
GATAPRDTSRSR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgacttcctcactcgccccgctcatgagcgcgatcgccggcctgcccggactcgcggac
atcccccgacaccgcgcctcgagcgatcaggtggacatcgtcgccccgaccgggctgcga
gcgccgaccgtcgccctcatcggcggcgacgtcccctctgacgcgccgcgcctggtgatc
acctcgaccgcccgcgaggccgacgacatggccgccgcgctcacggagctcgtcgggccg
gacctcgtcgcgaccttccccagctgggagaccctgccgcacgagcggctgagcccccgc
agcgacacggtcggtcgccggctggccgtgctgcgccggctgcgtcaccccgacgccacg
ggtgaggggcacgggcgacccggctatgtcatcgcctccgtccgcgcggtcctccagccg
atcgccaagggcctggccgacctcgagccggtgcgcctgcgggtcggggacgagcgggca
ctgcccgaggtcaccgcggcactcgccgccgctgcctatgtgcgcaccgacctcgtcgag
cggcgcggtgagttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgacgag
tccccggtccgcgtcgagttcttcggcgacaccgtcgacgagatccgatgcttcaaggtg
gccgaccagcgcagctccgagacggcgcaggagctgtgggcgccgccgtgccgcgagatc
ctcctgaccgacgcggtgcgcgagcgggccgcgaccgtcgcgcaggagctgcccggggtc
gccgacatgctgctcaaggtcgccgagggcatcgccgtcgagggcatggagtccctcggc
ccggtcctcgtcgacggcatggagtcgatcctcgacgtgctgccgaagggagcgggcgtc
gtcctcctcgacccggagcgggtccgcgctcgcgcccacgacctcgtctcgacgagcgag
gagttcctccaggcgagctgggccaatgccgcggccggcaatgccgtcccggtcgacctc
gagggcgtcctcgggaccgcgtcccactggaccctggcgcaggcccgcgagcacgcgctc
gacctcgacctgccgtggtggacggtcacccccttcgccgtcgacgacgagctggccgcg
atcgcggccgacatggacgaccgcgtcgaccacgacaacgtcgggctgcgcgtgccggcg
caggagccgccgcacttccggggcaacaccgagtcggccgtcgcccagctcgccgagtgg
agcggcgcggggtggcgcgtgctcgtggccaccgacggcgccggcctcgtcgcgcgcgtc
gccgaggtcctcggcgaggccgacgtcgccacccgcacgaccggacccgacgaccaggtg
gagctctccgacggggtcgtgacgctggtgcgggccagcctcggtaccggcttcgtcgcc
gaggagcagcgcctggccgtcatcacggaggccgacctgctcggctccagcggcacggga
gccacgacgcgcgacatgcgacggatgccgtcgcgtcgccgaaagcaggtcgacccgctc
cagctgcgcccgggcgaccacgtcgtccacgagcagcacggtgtcgggtccttcgtcgag
atgatccagcggaccgtccagggcgcgacccgcgagtacctcgtcatcgagtacgcgccc
tcgcgtcgcgggcaccccggtgaccggctcttcgtcccgaccgaccagctcgaccaggtc
acccgctacgtcggcggggacgcgccgccgctcaacaagatgggcgggggcgactggcac
aagaccaagtcgcgggcccagcggcacgtcaagcagatcgctgccgagctgatccgtctc
tacagcgcacggatggcgacgccggggcatgccttcggccccgacacgccgtggcagcgc
gagctcgaggacgccttcgcccacgtcgagacgcccgaccagctcggcacgatcgacgag
gtcaaggccgacatggagaagacggtcccgatggaccgcctcatctgcggcgacgtcggc
tacggcaagaccgagatcgccgtccgggccgccttcaaggcgatccaggacggcaagcag
gtggcggtcctggtgccgacgaccctgctcgtccagcagcacctcaacaccttctccgag
cgctacgccggcttcccggtcacggtcaaggcactcagccggttccagaccgacaagcag
gccaaggacgtgctcgaggggatggcctccggtgccgtcgacctggtcatcggcacccat
cggatcctcggcaacgaggtgaagttcaaggacctcggcctggtcatcatcgacgaggag
cagcgcttcggcgtcgagcacaaggagcagctcaaggcgatgcgcaccaatgtcgacgtg
ctcgccatgtcggccacgcccatcccgcgcaccctggagatggccgtcaccggtatccgc
gagatgtccactctcgcaacgcctcccgaggagcggcaccccgtgctcaccttcgtcggt
gggtacgaggagaagcaggtcgcggccgcgatccaccgcgagctgatgcgcgaggggcag
gtcttcttcgtccacaacaacgtcagcagcatcgaccggaccgccgcccgcatccgagag
ctcgtgccggacgcccgggtcgagatcgcccacggcaagatgggcgagcaccggctcgag
caggtcgtcctcgacttctgggagctccgcttcgacgtcctggtctgcacgacgatcgtc
gagaccggcctggacatctccaacgccaacacgctgatcctcgaccgggccgaccgcttc
ggcctgagccagctgcaccagctgcgcggccgggtcggccgcggccgggagcgcgcctac
gcctacttcctctacccgcccgacaagccgctcaccgagaccgcccacgaccggctccag
accatcgcgagcaacaccgacctcgggtccggcatgcaggtcgcgatgaaggacctcgag
atccgcggcgccggcaacctcctcggtggcgagcagtccgggcacatcgccggggtcggc
ttcgacctctacgtgcggatggtcggggaggcggtggccgacttcaagggcgaaggggag
accgcgcccgccgaggtcaagatcgagctgcccgtggacgcacacctgccgcacgagtac
atcccgggggagcggctgcgactcgaggcctaccggaagctggcgtcggcggagaccgag
gcggacctggacgaggtcatcgaggagctcaccgaccgctacggcgagccgccggagcct
gtgcgcaacctcgtcgaggtcgcgcgcctgcgcatcgtcgtgcgctctgccggcctgacc
gacgtggtcgcacagggcaacaacgtgcgcttcgccccggcccagctgcgcgagagcaag
cagctgcggctgtcgcggctctaccccaggtcgagctacaaggagggcaccggcacggtg
ctcgtccccaagcccatgacggcgcgcatcgggggctcgcccctgcgggacacggcggtg
ctctcgtgggccactgacctgatccgtcaggtcatgctcgatgatgtcatcgtggacaca
ggggcgacggcgccccgagacacctcgcgctcgcgctga
DBGET
integrated database retrieval system
