Juglans regia (English walnut): 109005153
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Entry
109005153 CDS
T05245
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109005153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109005153
03019 Messenger RNA biogenesis [BR:
jre03019
]
109005153
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109005153
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109005153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
109005153
NCBI-ProteinID:
XP_018839499
UniProt:
A0A2I4G6H8
LinkDB
All DBs
Position
4:complement(34395123..34403397)
Genome browser
AA seq
1055 aa
AA seq
DB search
METRRSFDRSREPGLKKPRLAEEIERGKNPNPNGNGRPFVQRSVVVPPPRFRPSDRDSES
SDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLHAAKAIAATVCA
NILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPAVHSSMRHLFG
TWKGVFPPPALQMIEKELGFTPIINVSSSLATTTSKPDSQSQRQPHSIHVNPKYLERQRL
QQSGRNVQRTNRDGPSESVHEKTIGAAFGDYEYSSDLSRNSGSGTERTGGRMTEQGHDKP
WYGTVGSVAETISSQKNGFNIKQGLPNYRAPKSAYADAQPKPTQSIALRTSTVMSSSWKN
SEEEEFMWDDMNSKSTAHGASDIPIDPRKNHSEKLGFEYHLQKPRSLDDVGSKVNKEVST
DFMYNDQKDFTPFGSRTSSSWPLEESQSIDGLVHTSGHSEGFAATLTQSSTSVASSISRI
GGHQQMGGLGVLINAVSGSTGTVGQQRFQSQGAASPSAQSPMHQHPQSPSLVVRPSHHQL
QNLAKREHPQTLSLPQPNLKGAQFLGRLNMGPSNQYAQDSSPFQHPNVQPGPLQKLQPRG
LQASASVPSFQPRHHDEQQSDSMLSQPSSEIRKPILPSVSDTGSPSTVGNSASDHSDLAA
ESSGQPSTSSLLAAVMKSGIFSNNSITGSLPNLTVPDIGQMPSHSGIQPPLPSGPPPVQI
TSSGPSVVSATSLGSSNNNAPVPASISQRNAGQPPLPSGPPPSSLAGSASAPTSSAVNNA
SDPISNLLSSLVAKGLISAAKTEVPTTVPTQTPNQSQKKSPGTIATSSVSVSSVPDSLPT
TRDGVSLLEPANQSSPVMPQSIPLEIENLIGFKFKPDVIREFHPSVINGLFDDLPLRCSI
CDIRLKLQESLDRHLEWHAQRKLEPNGLISTSRRWYTNTSDWVAGTAGLASGIESADSAY
ESSETLVKGERLVPADETQCACVLCGQVFEDFYCQERDEWMFKGAVYMTISSCAGEIEIS
NDNAAKGPIVHANCISESSIHDLGLASGIKMEKDV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcgtagatccttcgatagatcgagagaaccgggcttgaagaagccccgattg
gccgaggagattgagcgcggtaagaacccgaacccgaacgggaatggccgccctttcgtt
cagagatcagttgtggtgccgccgccaaggttccgaccgagtgatagagattccgaaagc
agcgactcgggccgagggggttatcagcctcaaccgccgcagcatcaggaactcgtcagc
cagtacaggactgcgctcgccgagctcactttcaattcgaagcctatcatcactaacttg
actataattgctggcgagaacctccacgctgccaaggcaatcgccgccactgtctgcgcc
aacattctcgaggttcctactgagcaaaagctgccttcactctatcttttagacagtatc
gtaaagaatattgggagggattacataaagtactttgctgctagactacctgaggttttc
tgcaaggcatataggcaagtagatcctgctgtacattcgagtatgcgtcatctttttgga
acttggaaaggagtcttccctcctccagcacttcagatgattgagaaagaacttggcttt
actcccataatcaatgtttcttcttcattagctactacaacatctaagccagattcgcag
tctcaacgccaaccacacagcattcatgtaaatcccaagtatttggaaaggcagcggctt
cagcagtctggcaggaatgttcagcgaactaatagagatggaccaagtgaatctgttcat
gagaagaccattggtgctgcatttggagactatgaatactcttctgatctttcaaggaat
tcaggctcaggaactgaaagaactggtgggaggatgactgagcaaggacatgacaaaccc
tggtatggaactgtaggaagtgttgcggagacaatctctagccagaagaatggtttcaat
atcaaacaaggattgcccaactatcgagcacccaaatctgcatatgctgatgcacaacca
aagccaacacagagtattgcacttaggactagcactgtgatgtctagtagctggaagaat
tctgaagaagaggagttcatgtgggatgatatgaactccaaatcaacagctcatggagca
tccgatattcctattgacccaaggaaaaatcattcagaaaaattggggtttgaatatcac
cttcaaaaaccacgcagtttagatgatgttggatcaaaggtcaataaggaagtttccact
gattttatgtataatgaccagaaagattttactccttttgggagccggacttcatcctcc
tggccgttggaagaatcacaatccattgatgggctggtccatacttcaggccactcagaa
ggctttgctgccactctcacacagtcgtcaacaagtgtagcttcttcaatatcaagaata
ggaggtcatcagcagatggggggccttggggttctaataaatgcagtgtcggggtccact
ggaactgtagggcagcagcggtttcagtctcagggagcagcatcaccatctgcacagtca
cccatgcaccagcatcctcaatcgccttcattagtagtacgcccttcccatcatcagttg
caaaatctggccaagcgggagcatccacagactctgtccctgcctcaacctaatttaaaa
ggagctcaatttttgggccggttgaacatggggccttccaaccaatatgctcaggattca
tcacctttccagcatccaaatgttcagccaggacccttgcaaaagctgcagccccgaggc
ttacaagcttctgcttcagttccttcttttcaaccaaggcaccatgatgagcaacaatca
gactccatgctgtctcagccttctagtgagattcgaaagccaatcctcccttcagtctct
gatactgggtctccctcaacagtggggaattctgcatcagaccattcagatcttgccgca
gaatcttcaggacaaccaagcacaagtagtttgttagcagctgttatgaagagtggaatt
ttctctaacaattctattacgggtagcctacctaatctgactgtcccagacattgggcaa
atgccttcacactctggtattcagcctcccctgcccagtgggcctcctccagtgcagatt
acatcctcagggcccagtgttgtgtcagcaacttcattaggttcatcaaataataatgca
ccagttcctgccagtatatctcaaagaaatgcaggacaaccacctttgccatctggtcca
ccaccttcatcacttgcgggtagtgcatctgcaccaacctcaagtgctgtgaataatgcc
tcagatccaatttcaaaccttttgagctcattagttgcaaaaggtttaatatcggctgca
aagaccgaggtgccgactacagtgccaactcaaacccctaatcaatcacaaaagaagagc
ccaggcaccattgcgactagctctgtatcagtttcttctgtacctgattcccttccgaca
acaagggatggggtatcgttgttggaacctgccaatcaaagttctcccgtgatgcctcaa
tccatcccattggaaatcgaaaacctcataggtttcaaattcaagccagatgtaattcga
gaattccatccatccgtgatcaatggactatttgatgaccttccacttcggtgcagtatt
tgtgatattcgactgaagcttcaagaaagtcttgatagacacttggagtggcatgctcag
agaaagcttgaacctaacggtttaattagcacatcaaggagatggtatacaaacacaagt
gactgggttgctgggacggcaggacttgcatctggcattgagtctgctgactcagcctat
gagtctagtgagaccctggtcaagggtgagcgcttggttcctgcagatgaaactcaatgt
gcctgtgttttgtgtggacaggtgtttgaagatttttactgccaagaaagggatgaatgg
atgttcaaaggggcagtatatatgaccatctcatcttgtgctggcgagatagaaatttca
aacgacaatgcagctaagggtcccattgtgcatgcaaattgtatttcagaaagttcaatt
catgacttgggactggctagtggtattaaaatggagaaggatgtataa
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