Juglans regia (English walnut): 109006217
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Entry
109006217 CDS
T05245
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109006217
03015 mRNA surveillance pathway
109006217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109006217
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109006217
mRNA cycle factors
P-body specific factors
109006217
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
109006217
NCBI-ProteinID:
XP_035550488
UniProt:
A0A6P9F3K3
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Position
1:2069980..2081924
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AA seq
503 aa
AA seq
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MKDPSVRNKVVIRHLPPSLTQPDLFIPIDEKFSGRYNWFSFRPGKNSQKHQRYSRAYIDF
KKPGDVFEFAEYFDGHVFVNEKGAQYKIVVEYAPSQRVSKPSSKKDSREGTIYKDPDYLE
FLKAIAKPAEHLPSAEIQLERREAEQAGSAKETPVVTPLMEYVRQKRAAESGAQGSSVVG
KIRRRSRVATSGKPVSSTTKRGSEKKYILKEGAKITPKKDKSTFTVVARREDQPLTSSGK
KMSENVTDSGKKILLLKGKERGVSRGVTSVAGNSSASTAPKENQHREGGERMIKSILLNN
ESRQSQSSTAVQPQQKFQILSSGSGKRPPRAIGARLGSNGLVSQGEPNSFGSEGDTKRTR
EDKFTKKIMQGLGTVSEKQEKRTRNRDRPDRGVWTPLHRSDVSHASDDHLSSPVSQPTQS
LADSVEASYGEMKDVPYGSKTAEVTAPTSGRSHRRVDRRGAVHVMKDDGSLNSSEGKSSR
RGSVSGHGALEKQVWVQKSSSGP
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacccctccgtaaggaacaaggtggtgattcggcacctgccaccgtctctcact
cagcccgatcttttcattccgattgacgagaaattctccggccgatacaactggttttct
ttccgtcccggcaaaaacagccaaaagcatcagagatattctcgagcctacatagatttc
aagaagcctggagatgttttcgagtttgccgagtattttgatggacacgtgtttgttaat
gagaagggtgctcagtataagattgtagttgaatatgctccttcacagcgtgtttcaaaa
ccatctagtaagaaggacagtcgtgaaggaaccatatataaagatcctgattacttagag
ttcctcaaagccattgcaaagccagctgagcatcttcctagtgcagaaatacagttggaa
agaagagaagcagaacaagctggctctgcaaaggaaactcccgttgttaccccacttatg
gaatatgttcgtcagaaacgagctgccgagagtggagcccagggttcatcagttgttggg
aagattaggagaagatctagggttgcaacctcaggcaaacctgtctcatctactaccaaa
cgaggctctgaaaagaagtatatactgaaggaaggtgcaaaaattactcctaaaaaagac
aagtcaactttcactgtagtagccaggcgagaggatcaaccgcttacttctagtgggaag
aaaatgtctgaaaatgtaacagattctggaaagaagattctgcttctaaaaggaaaagaa
cgaggagtaagtcgaggtgtgacatcagttgctggaaattcttctgcttcaactgctcca
aaagagaatcagcatcgtgagggtggtgagaggatgatcaaaagcatacttttaaataat
gaatctcgtcaaagtcaatcttcaacagcagtccagcctcagcagaaatttcagatcttg
agctcaggaagtggcaagcgaccaccacgagccatcggtgcacgcttgggatctaatggt
cttgtctctcaaggtgaaccgaactcatttggttctgaaggggatacaaaacggactcga
gaagataaatttacaaaaaagatcatgcaaggtttgggtactgtcagtgagaagcaagaa
aaacgcacaagaaacagggatagacctgatcgtggtgtttggactcctctccatcgatct
gatgtatcacatgctagtgatgatcacttgtcatcccctgtttcacagcccactcaatca
ctggctgattcagttgaagcttcttatggagaaatgaaagatgtgccctatggaagcaag
actgcagaggttacagcccccacaagtggacgttctcataggcgtgttgatcgccgtgga
gctgtccatgtaatgaaggatgatggctctctaaattcgagtgaggggaaatcttccagg
agaggaagtgttagtggccatggtgctcttgagaagcaagtgtgggtccagaagtcatct
tcaggtccttag
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