Juglans regia (English walnut): 109011455
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Entry
109011455 CDS
T05245
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109011455
03015 mRNA surveillance pathway
109011455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109011455
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109011455
5.6.2.5 RNA 5'-3' helicase
109011455
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109011455
mRNA cycle factors
Common to processing body (P body) and stress granule
109011455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
nSTAND3
PhoH
ATPase
AAA_16
SRP54
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
109011455
NCBI-ProteinID:
XP_018848217
UniProt:
A0A2I4GWE8
LinkDB
All DBs
Position
2:complement(23837638..23859104)
Genome browser
AA seq
1286 aa
AA seq
DB search
MDSQPNNLFETASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRPPVVSWPTPSDSLSDP
IDRGGGGGPGSDQLSDTSPVSAAPGGATKARSVVSGSSNSGGHNNNSNHNNSNSQVVEAL
AAGMGGLNFEETGDDDSYDYRKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNT
SGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCRE
PCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKT
NPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTI
RWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVA
LELRASQGVPVDLNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEV
QMVRNTLPKRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQ
GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSE
KSELHKLQLLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRF
RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL
LGVKPIRLQVQYRMHPSLSEFPSNNFYEGTLQNGVTVNERQSTGIDFPWPVPNRPMFFYV
QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRN
GSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGI
VILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFSGP
GVVPNDTFGSVASPGQNADRRSGRGRGTFVSPGPPNGTHKSGVHPTGYPMPRVPLPQFHG
GPPSQPYAIPTRGAAHGPVGAVSHAPPLGSRGFGAGRGNAGAPIGSHLPHHQGTQQAIGN
IGSTFNFPALENPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMAGMSQDFLGDDFK
SQGSHVPYNVADFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGTGNDFMSQ
DYMTHGSQGLFTQVGFNDPSQDDASQSHFGVANANPLQSQGLMNSLYSQPFGHYNTQPPL
NLQAPQQQPQQGQSQNSQTQKIHYNG
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaaccgaacaacctattcgagacggcttcgcagcccgacaccgccaacgac
gcttacaccttcctcgaattcaatacgcagggcgaggacttcgactatcccgagttccgc
gacccgattcgccccccggtggtctcctggccaacgccctccgattctctgtccgaccct
attgaccgcggaggaggcggaggccctggttcggatcaactctccgacacctcgcccgtt
tcggctgccccgggcggcgccacaaaggcccggtcagttgtctcgggcagcagcaatagc
ggtgggcataacaataacagtaatcataataatagcaatagtcaggtggttgaagccctg
gcagctgggatgggaggattgaactttgaggagaccggtgatgacgatagttacgactat
aggaaaggggattttacagaacacgcgtgcaggtactgtggtgtgtcgaacccagcctgt
gtggtgcgctgcaacgtcccgtcctgtcgcaagtggttctgtaattccagggggaacacg
tctggatcgcatatcgtcaatcacctggttcgggcaaaacataaggaagtctgtcttcat
aaagacagtcctttaggagaaacaatccttgaatgctacaattgtggatgtcgtaatgtg
ttcctgcttggatttatttcggcaaagacagagagtgtggtggttcttctttgtagggaa
ccttgcttaagtgttaatgcattgaaggacatgaattgggacctgagtcagtggtgtccc
ctgattgatgatcggtgctttttgcagtggcttgtcaagatcccttctgaacaggagcag
ttgagggcacgtcagatcagtgctcaacagataaacaaggtagaagaactttggaagaca
aatcctgatgcttcccttgaggatcttgaaaagcctggcgtggatgatgaacctcagcct
gtagccttgaagtacgaagatgcatatcagtatcaaaatgtatttgcaccactaattaag
cttgaggctgactacgataaaatgatgaaagagtctcaaagtaaggacaacgtcacaatt
cggtgggatattggtcttaacaagaagcgtatcgcatattttgtttttccaaaggaagac
aatgagttgcgccttgtacctggagatgagttgcggctgcgttactctggagatgcagct
cacccagcatggcagtcggtggggcatgtgatcaagttaacagcacaagaggaggttgca
cttgaacttcgtgctagtcagggagtgccagttgatttgaaccatggttttagtgttgat
tttgtgtggaaaagtacaagctttgatcgcatgcagggagcaatgaaaacttttgcagtg
gatgagactagtgttagtgggtatatttaccaccacttgttgggacatgaagttgaagtt
caaatggttcgcaatacgctgcccaaacgttttggtgcacccggtcttcctgagctcaat
gcctctcaagtgtttgctgtaaagagcgtccttcagaaacctataagtttgatccaaggt
ccacctggcacagggaaaactgtcacttctgcagcgattgtataccatatggccaaacaa
ggccagggacaggttttggtttgtgctcctagcaatgttgctgtagaccaactagctgaa
aagatcagtgccactgggttaaaggttgttaggctttgtgcaaaatcaagggaagctgtg
agttctccagttgagcatttgacccttcactatcaggttcgacatcttgacacatctgaa
aagagtgaacttcacaagttacaactactaaaagatgaacaaggagaactgtctagcagt
gatgagaaaaaatataaagcactgaagcgggcgactgagagagagatctctcagagtgct
gatgtcatttgctgcacctgtgttggtgctggagatcctcggctggcaaattttaggttt
cgccaggtacttattgatgagtctactcaggcaacggaacctgaatgtcttatccctttg
gtccttggggcaaagcaggtggttctcgttggtgatcattgccagcttggtccagtcatt
atgtgcaagaaagcagctcgtgctggtttagcccagtctctttttgaacggcttgttcta
cttggtgtcaaacctattagattgcaggttcaataccgtatgcacccatctctttcggag
tttccttctaacaacttctatgaaggcactctacagaatggagtaactgtaaatgaaagg
cagtcaacgggcattgactttccttggcctgtgccaaatcgtcctatgttcttttatgtc
cagatgggacaagaggaaataagtgccagtggaacatcctatctcaataggactgaggct
gcaaatgttgaaaagattgtaactactttcttaaggagcggtgtagtccctagtcagatt
ggggttataacaccatatgagggacaaagagcatatattgtgaactatatgtcaagaaat
ggttctctcagacagcaactttacaaggagatagaggttgcaagcgtcgattcatttcag
ggaagggaaaaagactacatcatcctatcatgtgtgaggagtaatgaacatcagggaatt
ggattcctcaatgatcctcgtaggctcaatgttgctctaacgcgtgctcgatatggtatt
gtcattctggggaatcctaaagtcctgagcaaacagccactgtggaatagcttattgaca
cactacaaggaacatgaatgcctggttgaagggcctttgaataacttgaagcagagcatg
gttcaatttcagaagcccaaaaagatctataatgataggagacttttctttagtggacct
ggagttgtgcctaacgatacatttggttctgttgcatcacctggccaaaatgccgataga
agaagcggtcgtggtaggggtacttttgtatcccctggacctcctaatggtacccataag
tctggggtgcatcctactgggtatccaatgccccgggttccccttccacaatttcatggc
ggtcccccttctcagccatatgctattccaactcgtggagctgcccatgggccagttgga
gctgtttctcatgcccccccactaggaagtcgaggttttggggctggtcgtggcaatgct
ggtgctcctattggcagtcatcttccacaccaccaaggcactcagcaagctattggaaat
attggctctacttttaactttccggctctggagaatccaaacagccagccatctgtgggt
ggtccattatcgcagcctgggtttgttaataatatgccagttcaagggccaagccaaaca
tttcgtgatggattttccatggcgggcatgtctcaggatttcttgggtgatgacttcaaa
agccagggatcacacgttccatataatgttgctgacttctccactcaggcttctcaaagt
ggatatgctgttgattatgttacccaaggagcgcagggtgggtttcctgggaactttctg
aaccaaaattctcaagctggatattctcgctttggcacagggaatgattttatgtcccag
gactacatgactcatggatcgcagggtctatttactcaggttggcttcaacgatccctca
caagatgatgcatcacagagccatttcggtgtggcaaatgccaacccacttcagtctcag
ggcttgatgaattctctctactctcagccctttggccactacaacacacaaccaccgctg
aacttgcaggctccacaacagcagccccagcagggtcagagtcagaactctcaaactcag
aaaatccattataatggttga
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