Juglans regia (English walnut): 109013752
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Entry
109013752 CDS
T05245
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109013752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jre03400
]
109013752
Enzymes [BR:
jre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109013752
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109013752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
PTCB-BRCT
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
109013752
NCBI-ProteinID:
XP_035548897
UniProt:
A0A6P9F2B1
LinkDB
All DBs
Position
8:complement(3315850..3331352)
Genome browser
AA seq
1172 aa
AA seq
DB search
MTDPTGTNTKFSVLCSLFTWMQRSKSSAKKRSKFRKFLDAFCDPGNYFCPIRLILPNLDR
ERGNYGLKESVLATCLIDALGMSRDSHDALRLFNWRKGGARSGSNAGNFSLVAAEVLQPR
QGMASGGLTIQDVNDLLDRLASSENRAEKTSVLSTLINKTNAQEMKWIIMIILKDLKLGI
SEKSIFHEFHPDAEDLFNVTCDLKLVCERLRSRRQRHKRQDIEVGKAVRPQLAMRVADAT
AAWKKLNGKEVVAECKFDGDRIQIHKNGNEIHFFSRNFLDHSEYVHGMLDVIIQNVLVDR
CILDGEMLVWDTSLNRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSL
KERHELLQKVVKPLKGRLEILVPNVGLGLNILRPSGEPCWSLIAHNVDDVERFFKETIEN
RDEGIVLKDPGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRHGGEVAQFLV
GLAERPAPNTYPRRFISFCRVGTGLSDEELDAVATKLKPHFRKYEYPRNGPPTFYQVTNN
SKERPDVWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDLQS
FVELVHSSNGTTQMGTNYGGLQESKQKRLKSSKGGKKNVSVVPSHLIKTDVSDIKGGSSI
FSNMMFYFVNVPSTVSLDSLHKMVAENGGTFSMNLNKSVTHCVAADGKGIKYQAAKLCGD
IIHCSWVLDCCSEKKLLHLQPKYFLFLSESSKKKLQEDIDEFSDSYYQDLDLLDIKQLLS
NVNRSEDMKTIDYYKKKYCPKKKWSLFHGCCVYFHSSISSLNPEWEVLWRLALRRLKLEV
SMAGGKVSSSLALATHLVVFSVPGLDVDFGTISKGLSLSEKHLLWNKVLHVVKSQWLEDC
LERDQRLPEETYSLKVIGVHNSNTVECKHDKHDLDLGVLSGSDNEEKQNMHCSPDGRKQG
REEAPLAKPKILASYEGVGKRKRGRPAGTSRKFKGKTTMVQARRTRARIGKRPAKISDNE
SDESGSHDEKTHGKEIKMMEGTHEMAGNGSSEIEETEIIEAFESSPRGKVAEQEVEKDVG
YQKWYDKVPEVGLTTTLSSQHSERSEKLEVMTDPVQAMLLDMIPSLGVTAARAKDTITVT
DGETQPLDPNAEPKKKKKVSYKDVAGELLKDW
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgacggacccgacagggaccaacactaagttcagcgtgctctgcagtctcttcacttgg
atgcagcggagcaagtcgtccgccaagaagcgttccaagttccgcaagttcctcgacgcc
ttctgcgatcctggcaactacttctgtcccatccgcctgatccttccgaacctcgaccga
gagcgcggcaactatggtcttaaggagtccgtcctcgccacctgcctcatcgacgccctc
ggcatgtcccgcgactcccacgatgccctccgcctcttcaattggcgcaaaggcggtgcc
cgctccggctccaatgccggaaacttctcccttgtcgcggctgaggtattgcagccaagg
caagggatggcttccggtggactaacaatccaggacgtgaacgatttgcttgatcgcttg
gcttcttctgaaaatagggctgagaagacatcggttctttctactctgataaacaagaca
aatgctcaggaaatgaagtggattatcatgattattcttaaagatttgaagctggggatt
agtgaaaagagcatttttcatgagttccatcctgatgctgaagacttgtttaatgtgaca
tgtgacctaaaattggtttgtgaaaggctaaggagtcgaagacaaaggcataaacgccag
gatattgaagttggaaaagctgtgcgcccacaactagctatgagagttgctgatgctaca
gctgcatggaaaaagcttaatgggaaggaagtggttgccgaatgcaaatttgatggtgat
cgcattcaaattcataagaatggaaatgagatacacttcttctcaaggaactttcttgat
cactctgaatacgtgcatgggatgttggatgttattatacaaaatgttctggtcgataga
tgtatacttgatggtgaaatgttggtctgggacacatctttgaatcgttttgctgagttt
ggttcaaatcaggaaatagccaaggccgcaaaggatggactggacagtgatagacagttg
tgctatgttgcatttgacattctttatgttggggataccagtgtaattcaccaaagcttg
aaggaacggcacgagctcctgcagaaagttgtgaagcctctgaagggtcgtttggaaatc
ttagtacctaatgttggacttggtcttaatattctccgcccttctggggaaccttgttgg
tcacttattgctcataatgtggatgatgttgagaggttcttcaaagaaaccattgagaat
agagatgaagggattgtgttaaaggaccctggttccaaatgggaacctagtgatcggagt
ggaaagtggttgaaattgaagcctgactacattcgtgctggctctgatctggatgttctt
attataggaggatactatggctcgggacgtcatggtggggaggtagctcaattcttggtg
ggccttgcagagcgtcctgcaccaaatacataccctaggcgatttatttctttctgtaga
gtgggtactggactttctgatgaggagctggatgctgttgcaaccaaattgaagcctcat
tttaggaaatatgaatacccaaggaatgggccaccaactttttatcaagtaacgaataac
tcaaaagaaagaccggatgtgtggattgacagccctgagaaatcaataattctttccatt
actagtgatatccgaactataaggtctgaggtatttgctgcaccatatagcctgagattt
ccgcgtattgaccgagtcagatatgacaaaccttggcacgaatgccttgatttgcaatct
tttgtagaacttgtacattcaagcaatggtactacacaaatggggacaaattatggtggc
ctccaggaaagtaaacaaaaacgcttgaaatcctctaagggagggaaaaagaatgtctct
gttgtaccttctcatttgataaagactgatgtttctgacattaaagggggctcctcaata
ttttcgaatatgatgttttactttgttaatgttccatcaaccgtctctcttgattctttg
cacaaaatggttgctgagaatggagggactttctcgatgaatttgaataaatcagttacc
cattgtgttgcagctgatggcaaggggattaagtatcaggcagcaaaactttgtggtgat
attattcattgttcttgggtattggattgctgctcagaaaagaagcttctccatttacag
ccaaagtacttccttttcctctctgaatcatcaaagaagaagttacaagaagacattgat
gaattttctgactcatactatcaggatcttgatcttctggacatcaaacagctattaagt
aatgtgaacagatctgaggatatgaaaactatcgactactataagaagaagtactgtcca
aagaagaaatggtctctctttcatggctgctgtgtttacttccactcttcaatatcatcc
ttgaatccagaatgggaagttctgtggagacttgcattaaggaggttgaagcttgaggtt
tccatggctggtggaaaagtcagtagcagtcttgctcttgctacccatttggtagtcttt
tctgtaccaggtcttgatgtggactttggaaccatatcaaaaggtttatctctgtcggag
aagcatctattatggaacaaagtgttgcatgttgtgaaatctcaatggttggaagactgc
ttggagagggaccaaagattgccagaagaaacatatagcttgaaggtgattggggtgcac
aattcaaacactgtagagtgcaaacatgataaacatgacctggatttaggagttctttct
ggatcggataatgaagaaaaacagaatatgcactgttctcctgatggaaggaaacaggga
agagaggaagctcctttagcgaaacctaaaattttggcctcatacgagggggtggggaaa
aggaaacgaggaagacctgctggtacaagcaggaaatttaaaggaaaaacaactatggtt
caagctcggagaacacgggcacgtattggaaagagacctgctaaaatatctgataatgaa
tcagacgaaagtggatctcatgatgagaagacgcacgggaaagagatcaaaatgatggaa
ggaactcatgaaatggcaggcaatggaagctcagaaatcgaagagactgaaataatagaa
gcatttgaatcatcacctaggggcaaggtggctgagcaagaggttgaaaaggatgttgga
tatcaaaagtggtacgacaaagttcctgaagtgggattgactacaaccctaagtagccaa
cacagtgagaggtccgagaagttggaagttatgactgatccggttcaagccatgttattg
gacatgattccaagtctcggagtgacggcagccagggctaaagatacgattactgtcact
gatggtgagacacaacccttggatcccaatgcagagcctaagaagaaaaagaaggtaagc
tacaaggatgttgctggtgagttactcaaggattggtaa
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integrated database retrieval system
