Juglans regia (English walnut): 109020009
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Entry
109020009 CDS
T05245
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109020009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109020009
03019 Messenger RNA biogenesis [BR:
jre03019
]
109020009
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109020009
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109020009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
109020009
NCBI-ProteinID:
XP_035545517
UniProt:
A0A6P9ESE8
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All DBs
Position
4:27865512..27874128
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AA seq
983 aa
AA seq
DB search
MASTGSENRENPRNLATATKVVATELPPQKLTLSILDRFKALLRQRDHELRGSAEDDTVT
PPSAEEIVHFYDLLLSELTLNSKPIITDLTIIAGDQKEHGKGIAEGICARILEAPVEQKL
PSLYLLDSIVKNIGREYVTYFSYCLPEVFCEAYRQVQPDQHNAMRHLFGTWSAVFPPSVL
RKIEAKLQFSPSANHQSSGLTPSRASESPRPTHGIHVNPKYLRQLEHSTVDGNIQQARGA
SALKMFGQKPSIGYDEFDLGQAELVSSQAGDPRLSSTGNAVEEFAADHSSRRLADRSSTA
HLKFKYGLGRATGGDEEMSSLHGKHYAGGNHTCFETKTMYNVSNGHEHLQPRALIDAYGN
DTGKRSFNDKPLLGQRHNIKGIDNKVVTPSWQNTEEEEFDWEDLSRPLVDRSRSNDFLST
SVPPFGRVSFRPAFGVRRASPLEANQAQLPALDNSSMIAEDAVPLLSFGRGSMGKIPGFR
AERNHILDSRYLQEAWNMPSHLAKGRGRNFHLPLLASGMSSSDGEKSLVDKLPDADSKID
GPQSIISRFCSSNLDSISVEVRPAVVPASVGVRPPLNVHNSHPLPLQPIFSQKKQMKSQF
DSINSSNNVNNRGPNGYLYDQQLDGFGNKELSAMKLSQLSNQRAGLISLNQRNQVQVTPL
QPQFLPSQGAHPSSAAVVPPHLVAPRLNHGYNPQMHGAAVSSVLSKPVTGAQLMLPVQNI
PNSSLHLQGGTLPIPPGVPPTSSQMIPLTQNAVPVVANQPTSISGLIGSLMAQGLISFTR
PTPVQDSVGVEFNADLLKVRHESAISALYTDLPRQCKTCGLRFKCQEEHSSHMDWHVTKN
RMSKNRKQKPSRKWFVSASMWLSGAEALGSEAVPGFLPTEVIVEKKDDEEMAVPADDDQN
ACALCGEPFDDFYSDETEEWMYKGAVYLNMPSGLTAGMDRSQLGPIVHAKCRSESSVVSP
EDFRQDERGITAEGSQSKRMRLS
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggcatccacgggctcagagaaccgagaaaacccaagaaacctagccacggcgacgaag
gtggtggccactgagctgccgcctcagaaactaacgctgtccattcttgaccggttcaag
gctctgctgaggcagcgcgaccacgagcttaggggttccgccgaagacgacactgtcacg
ccgccgagcgcagaggaaatcgtgcatttttacgatctattgttgtcggagttaacatta
aactcgaagcccattatcacggatctcaccataattgctggcgaccagaaggagcacgga
aagggcattgccgaaggcatttgcgctcggattctcgaggccccagttgaacaaaaactg
ccttcattatatctcttagacagtattgtcaagaatattggccgagaatacgttacatac
ttctcttattgtctgccagaggttttttgtgaggcatacaggcaagtacaacctgatcag
cataatgccatgcggcatctctttggcacctggtcagcagtatttccaccttctgtcctt
cgtaagattgaggcaaaactgcaattctctccttcagcgaaccatcaatcatctggttta
actccctcgagagcttctgaatctcctcgacccacccatggcatacacgtcaatccaaag
tatttgcgtcagttggaacattcaactgtggatggtaatattcagcaagctaggggagct
tcagctttaaaaatgttcggtcaaaaaccgtccattgggtatgatgaatttgatttgggt
caggcagagcttgtatcctcacaggctggagacccaagattgagctcaacgggaaatgca
gttgaagaatttgcagcagatcattcttctagaaggcttgctgataggagctctacagct
catcttaaattcaagtatggattaggtagagcaactggtggcgatgaggaaatgagtagc
ctgcatggaaaacactatgccggtggtaatcatacctgctttgaaactaaaaccatgtac
aatgtcagtaatggacatgagcacttacaaccaagagctttgattgatgcttatggaaat
gacactgggaagagatcttttaacgataagcctctgcttggtcagcgccacaacataaag
ggtatagacaataaggttgttacaccatcatggcagaatactgaagaggaagaatttgat
tgggaagatctgagccgccctttagtagaccgtagcaggagcaatgatttcttgtcaaca
tctgttccaccttttggaagagtcagttttaggcctgcctttggagtacgaagagcttcc
cctctagaggctaatcaggctcagcttcctgcactggacaattcttctatgattgctgaa
gatgcagtccccttactaagttttggtcgtggatcaatggggaagataccagggttccga
gctgagagaaatcacattctggattctcgctatctacaggaggcctggaatatgccttcc
catcttgccaaaggaagaggaaggaatttccatttgcctttactggcaagtggtatgtct
tcatcggatggtgaaaaatctctagttgacaagcttcctgatgctgattcaaaaattgac
ggacctcaatctattatatcaagattttgttcttccaatcttgactctattagtgttgag
gtacgaccggcagttgtaccagcatctgtgggggtaaggcctccgctaaatgtgcataat
tctcacccactacccctgcagcctattttttcacagaagaaacagatgaagagccaattt
gactcaataaattctagcaataatgtcaacaatcgtggtccaaatgggtatttatatgat
cagcagttggatggttttggaaacaaggagctgagtgctatgaaactgtcacaattatct
aatcagcgtgcaggactaatttctctgaatcagcgaaaccaggttcaagtcactccttta
cagccacaatttcttccatcccagggggcacatccatcttcagctgctgtagtgccacct
catttagtggctccacgtttgaatcatggatacaacccacaaatgcatggtgctgctgtt
agctcagttctgtcaaaacctgtaactggtgctcagttgatgttacctgttcaaaatatt
ccaaatagctcactacatttacaggggggaaccttgccaatacctccaggtgtccctccc
acttcatcgcaaatgatacctctcacacaaaatgcagttccagttgtcgctaatcagccg
acaagcatttctggattgatcggttctctcatggctcagggtttgatctcgtttaccaga
cccacccctgtacaggattctgtgggagttgaatttaatgctgaccttcttaaggtgcgc
catgagtctgcaataagtgccctatatactgacctcccaagacaatgcaaaacctgtggc
ctccgattcaaatgccaagaagagcacagtagtcatatggattggcatgtaaccaagaat
cgaatgtctaagaaccggaagcagaaaccttctcgtaagtggtttgtaagtgcgagcatg
tggctcagtggtgcagaggcattgggaagtgaagcagttcctgggtttttgcctactgag
gtcattgtagaaaagaaggatgatgaagaaatggccgtgcctgctgatgacgaccagaat
gcatgtgcattatgtggggagccttttgatgatttttacagtgatgagacagaggagtgg
atgtataagggggctgtctacttaaatatgcccagcggcttgacagcaggcatggataga
tctcagttaggtcctatagtgcatgctaagtgtcgctctgaatctagtgtggtttcccca
gaagattttagacaagatgaaaggggaattactgcagagggtagtcaaagcaaacgaatg
cggcttagttag
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