Janthinobacterium rivuli: P9875_18465
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Entry
P9875_18465 CDS
T09016
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jri
Janthinobacterium rivuli
Pathway
jri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P9875_18465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jri03400
]
P9875_18465 (mfd)
Enzymes [BR:
jri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P9875_18465 (mfd)
DNA repair and recombination proteins [BR:
jri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P9875_18465 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
DUF4217
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WFR77706
LinkDB
All DBs
Position
4064853..4068296
Genome browser
AA seq
1147 aa
AA seq
DB search
MSLDLTKALPKPGNRYALPALYGSSDAYALALAALELKARGQMLAVVVAQASDGQRLLDE
IPWFCGKELRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIQTRQCDVLIVPATTALVR
LAPPSFLAAYTFFFKKGEKLDEARLKSQLTLAGYSHVSQVMSPGEYSVRGGLLDLFPMGS
ALPYRLDLFGDTIETIRTFDADTQRSLYPVHEVRLLPGREFPMDEAARTTFRNRWREQFE
GDPSRSVVYKDISSGIASAGIEYYLPLFFEQTATLFDYLPPDASLALVGEIDAAIGRFWT
DTQSRYRFLKADRERPILPPESLFLSDEQFFGLAKPYPRLAIAKSNDALASELSAPVPNI
AVNRRADDPLANLRSYLLQAGRRVMICAESNGRRETLQQYFTEYDLHLTPVEGSDGFLQS
DAKLMLGVAPLHAGFELFTPDGNLSFITETELYAGSGRRVGSRKQEGVTQVESMVRDLSE
LKIGDPVVHINHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGAS
PEDAPLHSLGSGQWEKAKKRAAEQVRDTAAELLNLYARRALRQGHSFEFSSHDYQRFADS
FGFDETPDQAEAIHNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILA
PTTLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAFKGMADGTIDIVIGTHKLLSD
DVKFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSII
ATAPQKRLAIKTFVRSEGEAIIREACLRELKRGGQIYFLHNEVETIQNRLAMLTELLPEA
RIAVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDVQGLTKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG
EVLGESQSGEMTEIGFQLYSDMLNEAVRSLKAGKEPDLAAPLASTTEINLHVPALLPADF
CGDVHERLSIYKRLANCATQEKIDDIQEELIDRFGKLPDAVKALVETHRLRIAAKTVGIV
KIDVHGEAATLQFMAKPPIDPMRIIDLIQKNRHIKLHGQDKLKITAAMPDLAARVTQIKT
TIKQLTV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccttagacttaacaaaagccctccccaagcccggcaaccgctatgcgctgcccgcc
ctgtatggttcatccgacgcctatgccctggcgctggccgcactggaattgaaagcgcgg
ggccagatgctggccgtggtggtggcgcaggccagcgacggccagcgcctgctcgatgaa
atcccgtggttttgcggcaaggaattgcgctgccatttgctgccggactgggaaaccctg
ccctacgacgcgttttcgccgcaccaggatctggtctccgagcgcctggccaccctgcac
gaaatccagacgcgccagtgcgacgtgctgatcgtgccggccaccacggcgctggtgcgc
ctggcgccgccgtcctttttggccgcctacaccttcttcttcaagaagggcgaaaaactc
gacgaagcgcgcctgaagtcgcagctgaccctggccggctacagccacgtctcgcaagtg
atgtcgcccggcgaatactcggtgcgcggcggcctgctcgacctgttccccatgggttcg
gccctgccctaccggcttgacctgttcggcgacaccatcgaaaccatccgcacgttcgat
gccgacacccagcgctcgctgtatcccgtgcatgaagtgcggctgttgccggggcgcgag
tttcccatggatgaagcggcgcgcaccaccttccgcaaccgctggcgcgagcagttcgag
ggcgatccatcgcgctcggtggtctacaaggacatcagcagcggcatcgcctcggccggc
atcgaatattatctgcccctgttttttgaacaaacggccaccttgttcgactacctgccg
cccgacgcctcgctggccctggtgggcgagatcgatgcggccatcggccgcttctggacc
gatacccagtcgcgctaccgctttttaaaggcggaccgcgaacggccgattttgccgccc
gaatcgctgttcctgtccgacgagcagttcttcggcctggccaagccgtatccgcgcctg
gcgatcgcgaagtcgaacgatgcgctggcgtccgaactgtcggcgcccgtgccgaacatc
gccgtcaaccgccgcgccgacgatccgctggccaacctgcgcagctacctgctgcaagcg
ggtcgccgcgtgatgatctgcgccgaatcgaacggccgccgcgaaaccttgcagcagtac
ttcaccgaatacgatctgcacctgacgcccgtcgaaggcagcgatggcttcctgcaatcc
gacgccaagctgatgctgggcgtggcgccgctgcacgcgggctttgaattgttcacgccg
gacgggaatttatccttcatcaccgagacggagctgtatgccggttccggccgccgggtc
ggcagcaggaaacaggaaggcgtgacgcaggtcgagtcgatggtgcgcgacctgtcggag
ctgaaaatcggcgaccccgttgtgcacatcaaccacggcatcgggcgctacatgggcctg
accagcatggacctgggcgaaggcgaaacggagttcttgcacctcgaatacgcgaaggac
acgaaactgtacgtgcccgtgtcgcagctgcacgtcatttcccgctattcgggcgcgtcg
ccggaagacgcgccgctgcattcgctcggctcgggacagtgggaaaaagcgaaaaagcgc
gcggccgaacaagtgcgcgacacggccgccgagctgctcaacctgtatgcacgccgcgcg
ctgcgccaaggccactcgttcgaattctcgtcgcacgactaccagcgcttcgccgacagc
ttcggcttcgacgaaacgccggaccaggccgaagccatccacaacgtcatcaaggacatg
acttccggcaaaccgatggaccgcctcgtctgcggcgacgtcggcttcggcaagacggaa
gtggccttgcgcgcggccttcatcgccgtcatgggcggcaagcaggtggccatcctggcg
cccaccaccctgctggccgagcagcatgcgcaaaccttcgccgaccgcttcgccgactgg
cccgtacgcatcgcagaactgtcgcgcttccgcagcggcaaggaaatcacgcaggcgttc
aagggcatggccgacggcaccatcgacatcgtcatcggcacgcacaagctgctgtccgac
gacgtgaagtttacgcgcctgggcctcgtcatcatcgacgaggaacacaggttcggcgtg
cgccagaaggaagcgctgaaagcgctgcgcgcggaagtggacgtgctgaccctgacggcc
acgccgatcccgcgcaccctgggcatggccctggaaggcttgcgcgacttttccatcatc
gccacggcgccgcaaaagcgcctggccatcaagacgttcgtgcgcagcgaaggcgaagcc
atcatccgcgaagcgtgcttgcgcgaactcaaacgcggcggccagatctacttcctgcac
aacgaggtggaaaccatccagaaccgcctggccatgctgacggaactgctgcccgaggcg
cgcatcgccgtggcgcacggccagatgcacgagcgcgacctggaaaaggtcatgcgcgac
ttcgtcgcccagcgctttaatattttgctgtgcacgaccatcattgaaacgggcatcgac
gtgccgacggcgaacaccatcatcatgcaccgcgccgacaagttcggcctggcgcagctg
caccagctgcgcggccgggtcggacgctcgcatcaccaggcctacgcctacctgctggtg
cacgacgtgcaaggtctcacgaaactcgcgcagcgccgcctggacgccatccagcagatg
gaagaactgggcagcggcttttacctggccatgcacgacctggaaatccgcggcgccggc
gaggtgctgggcgagagccagtcgggagagatgacggaaatcggcttccagctgtattcg
gacatgctcaacgaagccgtgcgctcgctgaaagccggcaaggagccggacctggccgcg
ccgctggcctcgaccaccgagatcaacctgcacgtgccggccctgctgccggccgacttc
tgcggcgacgtgcacgagcgcctgtcgatctacaagcgcctggccaactgcgccacgcaa
gagaagatcgacgatatccaggaagagctgatcgaccgtttcggcaagctgcccgacgcc
gtcaaggccctggtcgaaacgcaccggctgcgcatcgcggcgaaaaccgtgggcatcgtc
aagatcgacgtgcatggcgaggcggccaccctgcaattcatggccaagccgccgatcgac
ccgatgcgcatcatcgacctgatccagaaaaaccgccatatcaagctgcatggccaggac
aaactgaaaatcacggccgccatgccggacctggccgcgcgcgtgacacagatcaagacc
accatcaagcaattgacggtgtag
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