KEGG   Janthinobacterium svalbardensis: CNX70_19225
Entry
CNX70_19225       CDS       T05119                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
jsv  Janthinobacterium svalbardensis
Pathway
jsv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:jsv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CNX70_19225 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jsv03400]
    CNX70_19225 (ligD)
Enzymes [BR:jsv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CNX70_19225 (ligD)
DNA repair and recombination proteins [BR:jsv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CNX70_19225 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: ATD62044
UniProt: A0A290WYT6
LinkDB
Position
complement(4366435..4368924)
AA seq 829 aa
MKAALKTYQAKRNFTVTPEPAGGGEVAGEVLTFVIQKHWASRLHYDFRLELDGTLKSWAV
PKGPSYDPRDKRMAVQVEDHPLAYASFEGTIPEKQYGAGKVIIWDKGTWQAQAATPDARA
ALADGELKFTLHGHKMQGKWVLVRMKGRGDKRSEKQPAWLLIKEKDGYARPALEFSVVDE
FPDSVKHKAMPRHKVAAAPADADLPATLSPQLATLVDAPPPDVQDWIFEAKFDGYRILAR
CDGEQVSLMTRNGNDWTAKLPKLRQALEQLGLPPGWYDGEIVVNDASGHPDFGALQRAFD
AEATSAIVYYLFDVAYFDGHDVRGQPVEARRALLQGLLEQLPASPLVRFSETLDAAPQKL
LAHACRLGLEGVIGKRRGSPYVARRSGEWIKLKCGLRQEFVIGGYTAPQGAREGIGSLLL
GVHDAQGKLRYAGNVGSGFDDAALRDLRRRLDALAVDASPFAGKAGGVRQPIWVKPQLVA
EVGFAQWTSGGAVRHAVFHGLREDKKPAAIVRERAQRIDREKTMQNQSTPDSVLPASFKV
SHAERVIDKDSGARKIDLVRYYALVGKLMLVHLRGRPVSLVRAPAGVGGELFFQKHADTS
TMPGVKQLDPGLDPEHAAMLEVASVQGLLSAAQWNVVEFHTQNALASAYDTPNRLVFDLD
PGKGVAWPAICEAAVLLRAFLTELGLPAWLKTSGGKGLHVVVPIRPKYDWDTVKAFSQAI
VAHMAQQIPARFVVKSGPANRVGKIFIDYLRNGRGATTVCAWSARTRSGLGISVPLAWEE
LDKLKAGDQWNVGNVHSRLDVGNAPWAGYARSARGLDAAMKKLAFTPPA
NT seq 2490 nt   +upstreamnt  +downstreamnt
atgaaagccgccctgaaaacctatcaagccaagcgcaatttcaccgtcacgcccgagccg
gcaggtggcggcgaggtcgcgggcgaggtgctcaccttcgtcatccagaagcactgggcc
agccgtttgcactatgattttcgcctggaactcgatggcacgctgaaaagctgggccgtg
ccgaaagggcccagctacgacccgcgcgacaagcgcatggcggtgcaggtggaagaccat
cccctggcctacgccagttttgaaggcacgatcccggaaaaacagtatggcgcgggcaag
gtcatcatctgggacaagggcacatggcaagcgcaggcggccacgccggacgcacgcgcc
gcgctggcggacggcgaactgaaattcaccctgcatggccacaagatgcagggcaagtgg
gtgctggtgcgcatgaagggtagaggtgacaagcgcagcgaaaagcagccagcctggctg
ctgatcaaggaaaaagacggctatgcccggccggcactggagttttctgtcgtggacgaa
ttccccgacagcgtcaagcacaaggccatgcccaggcacaaggtggctgccgcgccggcg
gatgccgatttacccgccaccctgtcgccgcagctggcgaccctcgtcgatgcgccgccg
ccagacgtgcaagactggattttcgaggcgaaattcgacggctaccgcatccttgcacgt
tgcgatggcgaacaggtcagcttgatgacgcgcaatggcaatgactggacggccaaattg
ccgaagctgcgtcaggcgctggaacagctgggcttgccgccaggctggtatgacggtgaa
atcgtcgtcaacgacgccagcggtcacccggatttcggcgccttgcagcgcgcgttcgat
gcggaagcgaccagcgccatcgtgtattacctgttcgacgtggcatatttcgatggccac
gatgtgcggggccagcctgtcgaggcgcgcagggctctgctgcaggggctgctggaacaa
ttgcccgcctcgccgctggtgcgtttcagcgagacgctcgatgctgcgccgcagaagttg
ctggcccatgcttgccgcctggggctggaaggggtgatcggcaagcggcgcggttcgccc
tacgtcgcgcggcgttccggtgaatggatcaagctcaaatgcgggctgcgccaggaattc
gtcatcggcggctatacggcgccgcagggcgcgcgcgagggaatcgggtcgctgctgctg
ggcgtgcacgatgcgcagggcaagctgcgctacgcgggcaatgtgggcagcggctttgac
gatgcggccctgcgtgacttgcgccgccgcctcgatgcgctggccgttgatgccagtccc
ttcgcggggaaggcgggcggcgtgcgccaacccatctgggtcaagccgcagctggtggcc
gaggttggttttgcgcaatggaccagtggcggcgccgtgcgccatgccgtgtttcacggc
ttgcgcgaagataaaaaaccggccgccatcgtgcgcgagcgggcacagcggatcgacagg
gagaagacgatgcagaaccaatctacgccggacagcgtcttgccggccagtttcaaggtt
agccatgcggagcgggtgatcgacaaggacagcggcgcgcgcaagatcgatctggtgcgc
tattacgcgctggtgggcaagctgatgcttgtgcatttgcggggccgtcccgtgtcgctg
gtgcgcgcgcctgccggcgtgggcggcgagctgtttttccagaagcatgccgatacgtcg
accatgccgggtgtcaaacagctcgatcccggcctcgatcccgagcatgccgccatgctg
gaagtggccagcgtacagggattgctgtcggcggcgcagtggaatgtggtggagtttcac
acgcagaacgcgctggccagcgcctacgacacgccgaaccgtctggtgttcgacctggac
ccgggcaagggcgtggcctggcccgccatctgcgaagcggccgtgctgctgcgcgccttc
ctgacggagctgggcttgcccgcctggctgaaaaccagcggcggcaagggcttgcacgtg
gtcgtgccgatccgcccgaaatacgactgggacacggtcaaggcgttttcgcaagctatc
gtggcgcacatggcgcagcagataccggcgcgttttgtcgtcaagagcggtcccgccaac
cgcgtcggcaagatcttcatcgattatttgcgcaacggacggggcgccaccaccgtgtgc
gcgtggtcggcccgcacgcgctccgggctgggcatttccgtaccgctggcctgggaggag
ctcgacaagctgaaggcgggcgatcaatggaacgtgggcaatgtccacagccgcctcgac
gtgggcaatgcgccctgggctggctatgcgcgcagcgccaggggcctcgatgcggcgatg
aaaaaactggcttttacgcctccggcttga

DBGET integrated database retrieval system