Janthinobacterium svalbardensis: CNX70_19225
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Entry
CNX70_19225 CDS
T05119
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
jsv
Janthinobacterium svalbardensis
Pathway
jsv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
jsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CNX70_19225 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jsv03400
]
CNX70_19225 (ligD)
Enzymes [BR:
jsv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CNX70_19225 (ligD)
DNA repair and recombination proteins [BR:
jsv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CNX70_19225 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATD62044
UniProt:
A0A290WYT6
LinkDB
All DBs
Position
complement(4366435..4368924)
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AA seq
829 aa
AA seq
DB search
MKAALKTYQAKRNFTVTPEPAGGGEVAGEVLTFVIQKHWASRLHYDFRLELDGTLKSWAV
PKGPSYDPRDKRMAVQVEDHPLAYASFEGTIPEKQYGAGKVIIWDKGTWQAQAATPDARA
ALADGELKFTLHGHKMQGKWVLVRMKGRGDKRSEKQPAWLLIKEKDGYARPALEFSVVDE
FPDSVKHKAMPRHKVAAAPADADLPATLSPQLATLVDAPPPDVQDWIFEAKFDGYRILAR
CDGEQVSLMTRNGNDWTAKLPKLRQALEQLGLPPGWYDGEIVVNDASGHPDFGALQRAFD
AEATSAIVYYLFDVAYFDGHDVRGQPVEARRALLQGLLEQLPASPLVRFSETLDAAPQKL
LAHACRLGLEGVIGKRRGSPYVARRSGEWIKLKCGLRQEFVIGGYTAPQGAREGIGSLLL
GVHDAQGKLRYAGNVGSGFDDAALRDLRRRLDALAVDASPFAGKAGGVRQPIWVKPQLVA
EVGFAQWTSGGAVRHAVFHGLREDKKPAAIVRERAQRIDREKTMQNQSTPDSVLPASFKV
SHAERVIDKDSGARKIDLVRYYALVGKLMLVHLRGRPVSLVRAPAGVGGELFFQKHADTS
TMPGVKQLDPGLDPEHAAMLEVASVQGLLSAAQWNVVEFHTQNALASAYDTPNRLVFDLD
PGKGVAWPAICEAAVLLRAFLTELGLPAWLKTSGGKGLHVVVPIRPKYDWDTVKAFSQAI
VAHMAQQIPARFVVKSGPANRVGKIFIDYLRNGRGATTVCAWSARTRSGLGISVPLAWEE
LDKLKAGDQWNVGNVHSRLDVGNAPWAGYARSARGLDAAMKKLAFTPPA
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccgccctgaaaacctatcaagccaagcgcaatttcaccgtcacgcccgagccg
gcaggtggcggcgaggtcgcgggcgaggtgctcaccttcgtcatccagaagcactgggcc
agccgtttgcactatgattttcgcctggaactcgatggcacgctgaaaagctgggccgtg
ccgaaagggcccagctacgacccgcgcgacaagcgcatggcggtgcaggtggaagaccat
cccctggcctacgccagttttgaaggcacgatcccggaaaaacagtatggcgcgggcaag
gtcatcatctgggacaagggcacatggcaagcgcaggcggccacgccggacgcacgcgcc
gcgctggcggacggcgaactgaaattcaccctgcatggccacaagatgcagggcaagtgg
gtgctggtgcgcatgaagggtagaggtgacaagcgcagcgaaaagcagccagcctggctg
ctgatcaaggaaaaagacggctatgcccggccggcactggagttttctgtcgtggacgaa
ttccccgacagcgtcaagcacaaggccatgcccaggcacaaggtggctgccgcgccggcg
gatgccgatttacccgccaccctgtcgccgcagctggcgaccctcgtcgatgcgccgccg
ccagacgtgcaagactggattttcgaggcgaaattcgacggctaccgcatccttgcacgt
tgcgatggcgaacaggtcagcttgatgacgcgcaatggcaatgactggacggccaaattg
ccgaagctgcgtcaggcgctggaacagctgggcttgccgccaggctggtatgacggtgaa
atcgtcgtcaacgacgccagcggtcacccggatttcggcgccttgcagcgcgcgttcgat
gcggaagcgaccagcgccatcgtgtattacctgttcgacgtggcatatttcgatggccac
gatgtgcggggccagcctgtcgaggcgcgcagggctctgctgcaggggctgctggaacaa
ttgcccgcctcgccgctggtgcgtttcagcgagacgctcgatgctgcgccgcagaagttg
ctggcccatgcttgccgcctggggctggaaggggtgatcggcaagcggcgcggttcgccc
tacgtcgcgcggcgttccggtgaatggatcaagctcaaatgcgggctgcgccaggaattc
gtcatcggcggctatacggcgccgcagggcgcgcgcgagggaatcgggtcgctgctgctg
ggcgtgcacgatgcgcagggcaagctgcgctacgcgggcaatgtgggcagcggctttgac
gatgcggccctgcgtgacttgcgccgccgcctcgatgcgctggccgttgatgccagtccc
ttcgcggggaaggcgggcggcgtgcgccaacccatctgggtcaagccgcagctggtggcc
gaggttggttttgcgcaatggaccagtggcggcgccgtgcgccatgccgtgtttcacggc
ttgcgcgaagataaaaaaccggccgccatcgtgcgcgagcgggcacagcggatcgacagg
gagaagacgatgcagaaccaatctacgccggacagcgtcttgccggccagtttcaaggtt
agccatgcggagcgggtgatcgacaaggacagcggcgcgcgcaagatcgatctggtgcgc
tattacgcgctggtgggcaagctgatgcttgtgcatttgcggggccgtcccgtgtcgctg
gtgcgcgcgcctgccggcgtgggcggcgagctgtttttccagaagcatgccgatacgtcg
accatgccgggtgtcaaacagctcgatcccggcctcgatcccgagcatgccgccatgctg
gaagtggccagcgtacagggattgctgtcggcggcgcagtggaatgtggtggagtttcac
acgcagaacgcgctggccagcgcctacgacacgccgaaccgtctggtgttcgacctggac
ccgggcaagggcgtggcctggcccgccatctgcgaagcggccgtgctgctgcgcgccttc
ctgacggagctgggcttgcccgcctggctgaaaaccagcggcggcaagggcttgcacgtg
gtcgtgccgatccgcccgaaatacgactgggacacggtcaaggcgttttcgcaagctatc
gtggcgcacatggcgcagcagataccggcgcgttttgtcgtcaagagcggtcccgccaac
cgcgtcggcaagatcttcatcgattatttgcgcaacggacggggcgccaccaccgtgtgc
gcgtggtcggcccgcacgcgctccgggctgggcatttccgtaccgctggcctgggaggag
ctcgacaagctgaaggcgggcgatcaatggaacgtgggcaatgtccacagccgcctcgac
gtgggcaatgcgccctgggctggctatgcgcgcagcgccaggggcctcgatgcggcgatg
aaaaaactggcttttacgcctccggcttga
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