Jatrophihabitans telluris: M6D93_05060
Help
Entry
M6D93_05060 CDS
T08151
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jtl
Jatrophihabitans telluris
Pathway
jtl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jtl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M6D93_05060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jtl03400
]
M6D93_05060 (mfd)
Enzymes [BR:
jtl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M6D93_05060 (mfd)
DNA repair and recombination proteins [BR:
jtl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M6D93_05060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
MFD_D3
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UQX89375
LinkDB
All DBs
Position
1051969..1055547
Genome browser
AA seq
1192 aa
AA seq
DB search
MSLAGVLDAVLVDPALQGLVASAGRPSLAASGPSALRPFAIAALAARADRTVLAVTSTGR
EAEDLLESLRSLLPTDEVALYPGWETLPHERLSPRADTVGRRLAVLRRLRHPSSSDVTTG
RLSVVVAPVRSVLQPQVPGLGDLEPVSLTAGDAGRELGDIVEALAAAGYARTELVANRGE
FAVRGGILDVFPPTEEHPLRVEFWGDEIEEVRYFKVADQRSLEIAPNGLWAPPCREMMLT
PQVRARAAELLALHPELGELLEPISQGMHVEGMEALAPVLVDGLELVLSEFPAGTHVLVC
EPERVRARAEDLVRTSEEFLAASWAAAAGGGKAPVDLGAASLRTLDEVRETAARLNLPWW
TLSPFTADAELAADGDVALTSVLEAAPAYRGETKTLLDDVAGWTAAGWQIALVFDGHGTA
KRGVEQLRGADVAARLVDSIDELPAGVAVVGCGHLDGGLISPELKLAVLTESDVTGQRGS
TTLDKSRMPSRRRNAIDPIQLASGDFVVHEQHGVGRYVEMVRRTINGGEREYLIIEYAPA
KRGQPGDRLFVPTDSLDQVTKYVGGEAPSLSRLGGSDWAKTKGRARKAVKEIAAELIRLY
SARMATKGYAFGSDTPWQRELEDAFPFVETPDQLAAIDEVKADMEKTLPMDRVICGDVGY
GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAHQHIQTFAGRMNQFPVTIKELSRFTHAGDV
DDITAGIADGSVDIVIGTHRLLQQTVRFKDLGLVIIDEEQRFGVEHKEYLKSLRTAVDVL
TMSATPIPRTLEMSLTGIRELTTILTPPEDRHPILTFVGAYDTRQIAAAIRRELLRDGQV
FFIHNRVESINRTAAKLAELVPEARIAVAHGQMGQDALEKIMVGFWQNDFDVLVSTTIVE
SGLDIPNANTLIVDRADIFGLSQLHQMRGRVGRARERGYAYFLYPPEKPLTETAHDRLAT
IAQHTELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRLVGEAVADFRGESKD
IDAPEIRVDLPIDANLPFDYLPGERLRLEAYRALASATTNEAVDGIRLELLDRYGPIPPE
VDNLLAVAKFKVVCRRYNVTEVSLQGQSVRFSPVLLPESAQIRLSRMYDKTLYKAPVSTM
AAARPKGVIKPDGTFATASFGGEPLRDQALLKWCTELLDTILGPVLQAVLSN
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcgccggtgttctggacgccgtcctcgtcgatcccgcgctgcagggcctcgtg
gcctccgccggccggccgtcactggcggcctccggtccctccgcccttcgtcccttcgcc
atcgcggccttggccgcccgggccgatcggaccgtgctggctgtcacctcgaccgggcgc
gaggccgaggatctgctcgagtcgttgcgcagtctgctaccaacggacgaggttgccctc
taccccggctgggagacgttgccgcacgagcggctatcgccccgggccgacacggttgga
cgtcgcctcgcggtgctgcgccggctgcgtcacccgtccagcagcgacgtcaccaccggc
cggctatcggtcgtcgtcgcgccggtgcgctccgtactgcaaccgcaggtgcccggcctc
ggcgatctggaaccggtcagcctgaccgccggcgatgccggccgcgagctcggcgacatc
gtcgaggcgctggccgcagcgggttacgcccggaccgaactggtggccaaccggggtgaa
ttcgcagttcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccgctgcgc
gtggagttctggggcgacgagatcgaagaagtccgctacttcaaggtggccgatcagcgc
tcgctggagatcgcgccgaacgggctctgggcgccgccgtgtcgcgagatgatgctgacg
ccgcaggtgcgagcacgcgcggccgaactcttggcactgcaccccgaactcggtgagttg
ctcgaaccgatcagccagggcatgcacgtggagggcatggaggcgttggccccggtgctc
gtcgacggcctggaactcgttctgtcggagttcccggccggaacccacgtgctggtgtgc
gagcccgagcgggtgcgggctcgcgccgaggatctcgtccggacctccgaggagttcctc
gccgcatcgtgggccgccgccgccggtggcggcaaggcgccggtcgacctcggagcggcg
tcgcttcgcacgctggacgaggtgcgtgagaccgccgcccggctgaatctgccctggtgg
acgctgtcgccgttcaccgccgatgccgagctggctgccgacggcgacgtcgccctcacc
tcggtgctggaggccgcgcccgcctaccggggcgagaccaagacgctgctggacgacgtc
gccggctggaccgcggccggctggcagatcgcgctcgtcttcgacggccacggcaccgcc
aagcgcggtgtggaacaactgcgcggcgcggacgtggccgcccggctggtcgactccatc
gacgagttgcccgcgggcgttgcggtggtgggctgtgggcacctcgacggtgggctgatc
tcgcccgagctgaaactggcggtgctcaccgagtccgacgtgaccggccagcggggatcg
accacgttggacaagtcgcggatgccgtcgaggcggcgcaacgccatcgacccgatccag
ctcgcttccggcgatttcgtcgtgcacgaacaacacggcgtcggccgctacgtcgagatg
gtccgccgcaccatcaacggcggcgagcgcgagtacctgatcatcgagtacgccccggcc
aagcggggccaacccggggatcgccttttcgtaccgaccgattcgctcgaccaggtcacc
aagtacgtgggaggcgaggccccgtcgctgtcccggctcggcggctcggactgggccaag
accaagggacgcgcccgcaaggccgtcaaggagatcgccgcggagctcatccggctgtac
tcggcccggatggcgaccaagggctacgcgttcggctccgacaccccgtggcaacgagag
ctggaggacgcgtttccctttgtggagacgcccgatcagctcgcagccatcgacgaggtc
aaagccgacatggaaaagaccctgccgatggaccgggtcatctgcggcgacgtcgggtac
ggcaagaccgaggtcgcggtgcgggccgccttcaaggccgtgcaggacggcaagcaggtt
gcggtgctggtgccgacgacgctgctggcccaccagcacatccagaccttcgccggacgg
atgaatcagttcccggtgacgatcaaggagctgtcgcgcttcacccatgccggcgacgtc
gacgacatcaccgccggcattgcggacggcagtgtggacatcgtgatcggcacccatcgc
cttctgcaacagacggtccggttcaaggacctgggcctggtcatcatcgacgaggaacag
cgtttcggcgttgagcacaaggaatatctcaagtcgttgcggaccgcggtcgacgtgctg
accatgtccgccacgccgatcccgcgcaccctggagatgtcgctgaccggcatccgcgag
ctcaccacgatcctgacgccacccgaggatcggcacccgatcctgaccttcgtcggggcc
tacgacacccgccagatcgcggccgcgatccgccgcgagctgctgcgcgacggacaggtc
ttcttcatccacaaccgcgtcgaatcgatcaaccggaccgcggccaagctcgccgaactc
gtcccggaggcgcggatcgccgtcgcccacggccagatggggcaggacgcgttggagaag
atcatggtcgggttctggcagaacgacttcgacgtgctggtctcgacgacgatcgtcgag
tccgggctcgacatccccaacgccaacaccctgatcgtggaccgcgccgacatcttcggc
ctgtcccagctgcaccagatgcgcggacgggtcggccgggcgcgcgaacgcggctacgcc
tacttcctctatccgccggagaagccgctcaccgagaccgcgcatgaccggctggccacc
atcgcccagcacaccgaactcggagccgggatgcaggtggccatgaaggatctggagatc
cgcggcgcgggcaacctgctcggcggtgagcagtccggccacatcgccggcgtcggcttc
gatctctacgtccgtctcgtcggggaggcggtcgccgatttccgcggcgagtccaaggac
atcgatgcgcccgagatccgggtcgaccttccgatcgacgcgaacctgcccttcgactac
ctgccgggggagcgcctgcggctggaggcctaccgggcgctggcctcggccacgacgaac
gaggccgtcgacgggatccggctcgaactgctcgaccgttacggcccgatcccgcccgag
gtggacaacctgctggcggtggccaagttcaaggtggtctgccgccggtacaacgtcacc
gaggtgtcgctgcagggtcagtcggtgcgcttctcgccggttctactgcccgagtccgcg
cagatccggctgtcccggatgtacgacaagaccctgtacaaggcgccggtttcgacgatg
gccgccgctcgtcccaagggtgtcatcaagcccgacggcactttcgccacagcgagcttc
ggcggcgagccccttcgcgatcaggcactgttgaagtggtgtaccgagctgttggacacc
atcctcggacccgtcctgcaagcggtgctgagcaactga
DBGET
integrated database retrieval system
