Jatrophihabitans telluris: M6D93_09210
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Entry
M6D93_09210 CDS
T08151
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
jtl
Jatrophihabitans telluris
Brite
KEGG Orthology (KO) [BR:
jtl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jtl03019
]
M6D93_09210 (hrpA)
Enzymes [BR:
jtl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M6D93_09210 (hrpA)
Messenger RNA biogenesis [BR:
jtl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M6D93_09210 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_30
SLFN-g3_helicase
nSTAND3
NACHT
T2SSE
AAA_25
PhoH
AAA_16
SRP54
ABC_tran
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UQX90159
LinkDB
All DBs
Position
complement(1966122..1970174)
Genome browser
AA seq
1350 aa
AA seq
DB search
MSTSPSEEPREASSKAAPHVRAPSPSAVDPAIATPVTAGQLRQRLEGLTLLDEHRLRRRL
DASRRKGRGKPESLSSLAREISQAERRVAARRDQPLKLDYPEQLPVSQRRTDLLAAIAEH
QVVVVAGETGSGKTTQLPKLCLELGRGVRGLIGHTQPRRIAARAVAERVAEELHTELGDQ
VGYAVRFTDQVSERTMVKLMTDGILLAEIQRDRLLRNYDTIIIDEAHERSLNIDFLLGYL
QQLLPRRPDLKVIITSATIDPARFARYFGDAPIVEVSGRGYPVEIRYRPLVDPDDPRAEE
ADLLGGISDAVRELLREPAGDVLVFLSGEREIRDAADTLGGLNLRDTEILPLYARLSAAE
QHRVFARHQKRRIVLATNVAETSLTVPGIKYVIDAGTARISRYSNRTKVQLLPIEPISQA
SAKQRAGRCGRTSDGVCIRLYAEADFQSRPEFTDPEILRTNLASVILQMAALELGTVSDF
GFLDPPDRRQVNDGLALLHELGAITSDSGQAAPALTSLGRRVAQLPVDPRLARMILESAD
RGCVCDVLVLAAALSIQDPRERPAEAQQQADAAHARFADPSSDFVGYLKLWLYLRQQQKT
LSSNQFRRMCRSEYLNYLRIREWQDLFTQLRQIAKGMGMAVGSQREDDPSATQVEQIHRS
MLAGLLSHIGLKEGPRGDYLGARGAKFAIFPGSALFKKQPQFVMAAELVETSRLWARTNA
SIDSVWAEELASHLVKRSYSEPHWERRQAAVMATERVSLYGVALVAGRKVNYAQIDPVHA
REEFIRRALVEGDWDTRHHFFRDNRRLVDEVHELETRTRRRDLLADDDTLFAFYDQRIPP
DIVSGRHFDAWWKKARHRTPEQLHLSMADLTRKGAEIDAEQFPDTWSSGSFDLELSYRFE
PGERSDGVTVTIPLPLLNDAAAAGLDWQVPGFRSELVTALLRGLPKAIRRLIVPVPDTAA
ELVGALPVELTGTTTDLTRTLSDSLYRLRGVDVPPESWDLTSLPDHLRPTYRIVDEAAVV
LAEAKDLSALQAQFAPALSAQLRTATADMARDGLREFPAEGLPRVVQRTAHGHELTGYPS
LVELASTSGSPAGAGATDSTVGIRVLDTEADQASAMWTGTRRLLALTVTSPARDLRAGLD
TRQRLLMSRSPHGSLDSLLADCVTAAIDLLMRRHGGPVWTRPEFDRLQADVRSGLLGAAR
TTVSSVASVIGEAQQTELALGEAVPPSLRSVVAAEQAHLARLIYPAFVSRTPAPQLSELP
RYLKAIQQRLIAARVNAARDAERQAVVDVVERDFAELVERAGPQVGPEALEEIRWMIEQL
RVSLFAQQLGTSGPVSVKRIHAAMDRLDPR
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtccacctcaccgtcagaagagccgcgagaagcctcctccaaagcggcgccgcacgtg
cgggcaccctcgccctcggcggtcgatccggcgattgcgacaccggtgacggccggccag
ctacggcaacgcctcgagggtttgaccctgctcgacgagcatcggcttcggcgccggctg
gacgcctcccgccgtaagggccggggcaagcccgaatcgttgtccagcctggctcgcgag
atcagccaggccgagcggcgggtcgccgcccggcgggaccagccgctcaaactggactac
cccgagcaactgccggtgagccagcgccggacggatctgcttgcggcgatagccgagcat
caggtcgtcgttgtcgccggtgagaccgggtcgggcaagacgacccagcttcccaagctc
tgcctggaactgggccgcggggtgcgcgggctgatcgggcacacccagccgcgccgcatc
gcggcccgggcggtcgccgagcgggtggccgaggagttgcacaccgaactcggcgatcag
gtcggctacgcggtgcggttcaccgaccaggtgtcggagcgcacgatggtcaagctcatg
accgacggcatcctgctggccgagatccagcgcgaccggctgctgcgtaactacgacacc
atcatcatcgacgaagcccacgagcgcagtctcaacatcgacttcctgctcggctatctg
cagcagctgctcccccggcgtccggacctcaaggtgatcatcacctcggcgacgatcgac
cccgctcggttcgcccgctacttcggcgacgcccccatcgtcgaggtgtcgggccgcggt
taccccgtcgagatcaggtaccgccccctggtcgacccggacgatccgcgtgcggaagag
gccgacctgctcgggggaatctccgacgcggtccgcgagctgctccgcgagccggccggc
gatgttctggtctttctcagcggcgagcgggagatccgcgacgccgcggacacgctcggt
gggctcaacctgcgcgacaccgagatccttccgttgtacgcccggctgtccgccgccgaa
cagcaccgggtgttcgcgcggcaccagaagaggcggatcgtcctggccaccaacgtcgcc
gagacatccctcacggtgccgggaatcaagtacgtcatcgacgccggcaccgcgcgaatc
tcgcggtacagcaaccgcacgaaggttcagctcctgcccatcgagcccatctcgcaggca
tcggccaagcagcgtgccggccgctgcgggcgcacctccgacggcgtctgtatccgtctg
tacgcagaggcggacttccagtcacgaccggagttcaccgatcccgagatcttgaggacg
aacctggcctcggtcatcctgcagatggccgccctggaactgggcacagtctcggacttc
ggttttctcgacccaccggaccggcgccaggtcaacgacgggctcgcgctccttcacgaa
ctaggggcgatcacttccgactcggggcaggccgccccggcgctcacgtcgctcgggcgg
cgggtcgcccaactgcccgtcgacccacgactggcgcgaatgattctggagtcggccgat
cgtggctgcgtctgcgacgtcctcgtcctcgctgcggctttgtcgatccaggaccctcgg
gagcgaccggccgaggcgcaacagcaggccgacgcggcgcacgcgcgcttcgccgacccc
agctcggacttcgtcggctacctcaagctctggctctacctgcgccaacagcagaaaacc
ctgtccagcaaccagtttcgtcggatgtgccgcagcgagtatctgaactacctgcgcatc
cgggagtggcaagacctgttcacccagcttcgccagatcgccaaaggcatgggcatggcg
gtcggtagccagcgggaggacgatccgtcggcgacgcaggtcgagcagatccaccgcagc
atgctggccgggctgctgagccacatcggtctcaaggagggcccgcgcggcgattacctc
ggtgcgcgcggggcaaagttcgccatcttccccggttcggcgctgttcaagaagcaacca
cagttcgtcatggccgcggaactggtcgagacgtcccgactctgggcgcgcaccaatgcc
tcgatcgactcggtctgggcggaggagctggcaagccacctggtcaagcgcagctacagc
gaaccgcactgggagcgccgccaggccgcggtgatggcgaccgaacgggtgagtctgtac
ggcgtcgcgctggtggccgggcgcaaggtcaactacgcccagatcgatcctgttcatgcc
cgcgaggagttcatccggcgtgctttggtcgagggcgactgggacactcgccaccacttc
ttccgggacaaccgccggctcgtagacgaggtccacgagctggagacacggacccgtcga
cgtgatctgctggccgacgatgacacacttttcgccttttacgaccagcgcattcccccc
gacatcgtctccggccggcacttcgacgcgtggtggaagaaagcccgacaccgcacaccc
gagcaacttcacctgagcatggccgacctgacgcgcaagggcgctgagatcgatgccgag
cagtttcccgacacgtggtcatcgggttcattcgacctggaactgagttatcgcttcgag
cccggcgaacgcagcgacggagtcacggtcacaatcccgctgccgctgctcaacgatgcg
gccgccgccggcctcgactggcaggtccccggcttccgcagtgagctcgtgacggcactg
ctgcgcggcctgcccaaggcgatccgccggctcatcgtgccggttcccgacaccgccgcc
gaactggtcggggcgctgcccgtcgagctcaccgggacgacgacggacctgacccgcacc
ttgtccgactccctgtaccggctgcggggggtcgacgttccgcccgagagctgggatctg
accagcctgcctgaccacctgcgaccgacgtaccgaatcgtcgacgaggccgcggtcgtg
ctggccgaggccaaggatctgagcgcgctgcaggcacagttcgccccggcgttgagtgcc
cagctgcgcacggcaacggccgacatggcccgcgacggacttcgcgagtttcccgccgaa
gggctgccgcgggtcgttcagcgaaccgctcacggtcacgagctcaccggttatccctcg
ctcgtcgagctggcatcgacctccgggtctccggccggggcgggggccaccgacagcacc
gtgggcatccgcgtgctggataccgaggccgaccaggctagcgcgatgtggaccggaacc
cgtcgcctgctcgctctgaccgtgaccagtccggctcgcgacctgcgggcgggcctggac
acccggcagcggttgctgatgagccggtcaccgcacggctcgctggattcgctgctcgcc
gactgtgtcaccgcggcgatcgacctcctgatgcgccgtcatggcgggccggtctggacc
cggcccgaattcgatcggctgcaggccgatgtccgctccggcctcctaggtgcggctcgc
acgaccgtctcgtccgtggcctcggtgatcggcgaggctcagcagaccgagcttgcgctg
ggcgaggccgtgcccccgtcgcttcggtcggtcgtggcggccgagcaggcgcacctggcc
cgcttgatctatccggccttcgtgagccgcacgccggccccgcagctgagcgagctccct
cggtacctcaaggccatccagcagcgactaattgcggctcgcgtcaatgccgcccgggat
gcggagcggcaggcggtggtcgacgtcgtcgagcgtgatttcgccgagctggtggagcgc
gcgggtccgcaggtcgggccggaagcgctggaggagatccggtggatgatcgaacagctg
cgggtgagcctgttcgcgcagcagttggggacgagcggacccgtttcggtgaagcggatt
cacgccgcgatggatcggctggaccctcgctga
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