Kitasatospora albolonga: B7C62_12450
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Entry
B7C62_12450 CDS
T05009
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kab
Kitasatospora albolonga
Pathway
kab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7C62_12450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kab03400
]
B7C62_12450
Enzymes [BR:
kab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B7C62_12450
DNA repair and recombination proteins [BR:
kab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B7C62_12450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
4HBT_3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARF72985
LinkDB
All DBs
Position
complement(2892597..2896127)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDVVVTDPAIAEAVKAATDGHRMHVDLVGPPGARPFAVAALARQTGRTVLAVTA
TGREAEDLAAALRTLLPPDTVAEFPSWETLPHERLSPRSDTVGRRIAVLRRLAHPREDDP
ETGPVSVVVAPIRSVLQPQVKGLGELQPVALAGGQSADLGEVVEALSAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEVAAHGLWAPPCRELL
LTEKVRERAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKDAMAL
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELGMM
WWSTSPFAADDADHDEDTLKLSMHAPEAYRGDTARALADTKGWLADGWRTVYVTEGQGLA
SRTVEVLSGEGIPARLAPDLTEIPPSLVHVSCGAIDQGFVDPALKLAVLTETDLTGQRTA
TKDLGRMPARRRKTIDPLTLELGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYS
ARMAAPGHAFGADTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYSQFPVNVRALSRFQSETESK
ATLEGLKDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGG
AEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATSEDDIRAVREELTDRYGPL
PEPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPKTVIKPAA
HQILVPRPTTGRIGGKPVVGRELLSWTGEFLTTILG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggatgtcgtcgttaccgacccggcgatcgccgaggcggtg
aaagccgccaccgacggccaccgcatgcacgtcgacctggtgggcccacccggtgcccgg
ccgttcgccgtggccgcgctggcccggcagaccggcaggaccgtgctggccgtcaccgcg
accggccgggaggccgaggatctggccgccgccctgcgtacgctgctgccgccggacacg
gtggcggagttcccgtcctgggagaccctgccgcacgagcgcctctccccgcgctcggac
accgtgggccgccgcatcgccgtgctgcggcgcctggcccacccgcgcgaggacgacccg
gagacgggcccggtatcggtggtcgtcgcgccgatccgttccgtgctccagccgcaggtc
aaggggctcggcgagctccagcccgtggcgctggccggtgggcagagcgcggacctgggg
gaggtggtggaggcgctgtcggccgccgcgtactcccgggtggagctggtggagaagcgg
ggcgagttcgccgtacgcgggggaatcctggacgtcttcccgccgaccgaggagcacccc
cttcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaagatcgccgac
cagcggtccctggaggtggccgcgcacgggctgtgggcgccgccctgccgtgagctgctg
ctgaccgagaaggtacgggagcgggccgccgccctcgccgaggcgcacccggagctgggc
gagctgctcggcaagatcgcggagggcatcgcggtcgagggcatggagtcgctggccccg
gtcctggtggacgacatggagctgctgctcgacgtcctgccgaaggacgcgatggcgctg
gtctgcgatccggagcgggtccggacccgggcggccgacctggtcgccacgagtcaggag
ttcctccaggcgtcgtgggcggcgacggcgggcggcggggaggccccgatcgacgtgggc
gcggcctcgctgtggagcatcgcggacgtccgggaccgggcccgcgagctggggatgatg
tggtggtcgacctctcccttcgcggccgacgacgccgaccacgacgaggacaccctcaag
ctgtcgatgcacgccccggaggcgtaccggggcgacaccgcccgtgcgctcgccgacacc
aaggggtggctggccgacgggtggcgcacggtgtacgtgacggagggccaggggctcgcc
tcccgtacggtcgaagtgctcagcggcgagggcatcccggcgcgtctggcgccggacctc
accgagatccccccgtccctggtccatgtctcctgcggcgccatcgaccagggcttcgtc
gacccggcgctgaagctcgcggtgctcaccgagaccgacctcaccggccagcgcaccgcc
accaaggacctcggccggatgccggcccgccgccgcaagacgatcgacccgctgacgctg
gagctcggggactacatcgtccacgagcagcacggtgtcggccggtacgtggagatggtg
cagcgcacggtccagggcgcgacccgcgagtacctgctggtcgagtacgcccccgccaag
cgcggccagcccggcgaccggctctacatcccgaccgaccagctggagcaggtcaccaag
tacgtgggcggcgaggccccgaccctgcaccggctcggcggcgccgactggacgaagacg
aagcagcgggcgaagaaggcggtcaaggagatcgccgcggacctgatcaagctgtactcg
gcccggatggcggcccccggccacgccttcggcgcggacacgccctggcagcgggagctg
gaggacgcgttcccgtacgcggagacgccggaccagctctccacgatcgccgaggtcaag
gaggacatggagaagacggtcccgatggaccggctgatctgcggtgacgtggggtacggg
aagacggagatcgcggtccgggcggcgttcaaggcggtgcaggacggcaagcaggtggcg
gtgctcgtccccaccacactcctggtccagcagcactacggcacgttcaccgagcgctac
tcccaattcccggtcaacgtccgcgccctgagccgcttccagtcggaaacggagtccaag
gcgacgctcgaagggctgaaggacggctcggtcgacctggtcatcggcacccaccgcctc
ttctcctccgagacgaagttcaaggacctcggcctggtcatcgtggacgaggagcagcgg
ttcggtgtcgagcacaaggagcagctgaagaagctccgcgccaacgtggacgtcctcacc
atgtccgcgacgcccattccccgtacgctcgaaatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcgccacccggtgctcaccttcgtcggtccgtac
gaggagaagcagatcggcgcggcgatccggcgtgaactcctgcgggagggccaggtcttc
tacatccacaaccgggtcgagtccatcgaccgggccgccgcccgcctccgcgagatcgtc
cccgaggcgcggatcgcgacagcgcacgggcagatgtccgaacaggctctggaacaggtg
gtggtggacttctgggagaagaagttcgacgtcctggtctccacgacgatcgtcgagtcc
ggtatcgacatctccaacgccaacacgctgatcgtggagcgcggcgacaacttcggcctc
tcccagctgcaccagctgcgcggccgggtgggccgaggccgcgaccggggctacgcctac
ttcctgtacccgcccgagaagcccctgacggagacggctcacgagcgcctggcgacgatc
gcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggatctggagatccgc
ggcgcgggcaatctgctcggcggcgagcagtcgggccacatcgcgggcgtcggcttcgac
ctgtacgtacgcatggtgggcgaggcggtcgccgactaccgggcccagatggagggcggc
gccgaggaggagcccccgctcgaggtcaagatcgagctcccggtcgacgcgcacgtcccg
cacgactacgcccccggcgagcgcctgcgcctccaggcgtaccgcgcgatcgcctcggcc
acctcggaggacgacatccgcgcggtccgcgaggagctcaccgaccgctacggccccctg
cccgaaccggtcgagaacctcctcctggtggccggcctgcgcatgctggcccgcgcctgc
ggagtcggcgagatcgtcctccagggctccaacatccgcttcgccccggtggagctgcgc
gagtcccaggaactgcgcctcaagcgcctccaccccaagacggtcatcaagcccgccgcc
caccagatcctggtcccgcgcccgacgacgggccgcatcggcgggaagccggtggtgggc
cgggaactgctgtcgtggacgggggagttcctgacgacgatcctggggtag
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