Kazachstania africana: KAFR_0B00830
Help
Entry
KAFR_0B00830 CDS
T02487
Symbol
KAFR0B00830
Name
(RefSeq) hypothetical protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
kaf
Kazachstania africana
Pathway
kaf03030
DNA replication
kaf03410
Base excision repair
kaf03420
Nucleotide excision repair
kaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KAFR_0B00830 (KAFR0B00830)
03410 Base excision repair
KAFR_0B00830 (KAFR0B00830)
03420 Nucleotide excision repair
KAFR_0B00830 (KAFR0B00830)
03430 Mismatch repair
KAFR_0B00830 (KAFR0B00830)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kaf03032
]
KAFR_0B00830 (KAFR0B00830)
03400 DNA repair and recombination proteins [BR:
kaf03400
]
KAFR_0B00830 (KAFR0B00830)
Enzymes [BR:
kaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KAFR_0B00830 (KAFR0B00830)
6.5.1.6 DNA ligase (ATP or NAD+)
KAFR_0B00830 (KAFR0B00830)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
KAFR_0B00830 (KAFR0B00830)
DNA replication proteins [BR:
kaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
KAFR_0B00830 (KAFR0B00830)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
KAFR_0B00830 (KAFR0B00830)
DNA repair and recombination proteins [BR:
kaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
KAFR_0B00830 (KAFR0B00830)
NER (nucleotide excision repair)
Other NER factors
KAFR_0B00830 (KAFR0B00830)
MMR (mismatch excision repair)
Other MMR factors
KAFR_0B00830 (KAFR0B00830)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
13882605
NCBI-ProteinID:
XP_003955516
UniProt:
H2APT1
LinkDB
All DBs
Position
2:157155..159287
Genome browser
AA seq
710 aa
AA seq
DB search
MLKLLCCNKYPAQRLTPLVYIYSGIMSSNSKRQATLARFFTSIKPSADDQNSKTSSSPVP
PPSSSSSSTTANGSSPLKKPKLSPIESSKTDSSETTVKQEFVCDIPYADVCVLFQEIENI
SSRLQIIKLCSEFFTKAMKQNTANLIPLTYLFINKLGPDYEMGLELGLGENLLMKTISES
CGKSLQQVKLDYKDIGDLGTIAMNARNVQPTMFKPKPLTVGYVFQNLKLIAKSSGKDSQL
KKIRLIKKLLTACKGIEAKYLIRSLESKLRIGLAEKSVLISLSKALLINEYNNTLDPDME
LIEKAEQKIRDAFCQIPNYEIVINSCLKYGIMNLDEHCSLRPGIPLKPMLAKPTKTIMEV
FDRFQNIHFTSEYKYDGERAQVHLMNDGSMRIYSRNGENMTERYPEINVTDFIKDLNLTK
SLIIDCEAVAWDREEKKILPFQVLSTRKRKDVDIKDIKVRICLFAFDILCHNDEKLINKS
LRERREILHSVTREVHGEFTYAKELSTNNLDELQLFLDQSVKDSCEGLMVKVLDGEDSHY
EPSKRSRNWLKLKKDYLDGVGDSLDLCVLGAFYGRGKRTGTYGGFLLGCYNQDTGEFETA
CKIGTGFSDEVLQSLYDRLKSTTIDGPKATYIYDSSAQPDVWFEPTLLFEVLTADLSMSP
IYKAGASTYSKGISLRFPRFIRLREDKSVEEATSSEQIIELYENQSHVAK
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagctactctgctgtaataagtatcccgcacaacgtttgacgccactagtatat
atatattcaggaataatgtcctcaaatagcaagagacaagcaactttagctagattcttc
acgtcaataaaaccttctgcagacgatcagaattcaaagacctcctcatctcccgtgcca
cctccgtccagttcttcgtcttctaccacagctaatggctcttccccattgaaaaagccc
aagttgagcccaattgagagctcgaaaacagattcttctgaaaccaccgttaaacaagag
tttgtatgcgatattccttacgcagatgtgtgtgtactgttccaagaaattgaaaacata
tcttccagattacaaattattaaactttgttctgaatttttcactaaagccatgaaacag
aacacagcaaacttaatcccattgacgtaccttttcattaataaattaggtcccgattac
gaaatgggactggagttgggtctaggtgaaaatttactaatgaaaacaatcagtgaatcc
tgtggtaaatcattacaacaagttaaattggattataaggatattggggatctcggaacc
attgccatgaacgcaagaaatgtccagccaactatgttcaaaccaaaacctttaactgtc
ggttacgtattccaaaatttgaaattaattgccaaatcaagtggtaaagattctcaactc
aagaaaataagattaattaaaaaacttttgactgcttgtaaaggtatcgaagccaaatat
ttgatcagatctctggaatcgaaactaagaattggtctcgcagagaagagtgtccttata
tccctatccaaagcactattaatcaatgaatacaacaatacacttgatccagacatggaa
ctgattgaaaaagctgaacaaaaaatcagagacgccttttgtcaaatccccaattatgaa
attgttataaattcatgccttaaatatggtataatgaatttagatgaacactgttcttta
agacctggtattccattgaaaccaatgttagctaaaccaacaaaaacaataatggaagtg
tttgacagatttcaaaatatacattttacttccgaatataagtacgatggtgagagagct
caggtacatttgatgaatgatggaagcatgagaatttactctcgtaatggcgaaaacatg
accgaaagatatcctgaaattaatgtaacagattttatcaaggatctaaaccttacaaaa
agtttaatcatcgattgtgaagcagttgcctgggacagagaggaaaagaaaatcttacca
tttcaggtcctaagtacaagaaagcgtaaggatgtcgatatcaaggatattaaagttaga
atttgtttattcgcatttgatatattgtgtcataatgacgaaaaattaatcaacaagagc
ctaagagaaagaagggaaatcttgcattctgtaacaagagaagttcatggagaatttact
tatgcaaaagaattatccactaataatttagatgaattacaacttttcttggatcagtct
gttaaggattcatgtgaaggcttaatggtgaaagtcttagacggtgaagactcgcattat
gagccaagtaaaagatcccgtaactggttgaaattgaaaaaggactacttagacggtgtt
ggtgattctttagatctttgcgttcttggtgccttttatggaagaggtaagcgtactggt
acatacggtggattcctgttaggctgttacaatcaagatacaggtgaattcgaaacagca
tgcaaaattggtacagggttttcagacgaagtgttacagtccctatatgacagattgaag
agtacgacaatcgatggccctaaagccacatacatctacgactccagcgcccaaccagac
gtttggttcgagccaactttgctgtttgaagttcttactgcagatctttccatgtcacca
atttacaaagcaggtgcatcaacctactcgaagggtatctcattgagattcccaagattc
atcagacttcgagaagacaaatccgtcgaagaagcgacttcttccgaacagataatagaa
ctgtatgaaaaccaatctcacgtagccaaatag
DBGET
integrated database retrieval system
