Kazachstania africana: KAFR_0H00310
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Entry
KAFR_0H00310 CDS
T02487
Symbol
KAFR0H00310
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
kaf
Kazachstania africana
Pathway
kaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KAFR_0H00310 (KAFR0H00310)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kaf03041
]
KAFR_0H00310 (KAFR0H00310)
Enzymes [BR:
kaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KAFR_0H00310 (KAFR0H00310)
Spliceosome [BR:
kaf03041
]
Complex C
Other components
Step II factors
KAFR_0H00310 (KAFR0H00310)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
CR6_interact
nSTAND3
SLFN-g3_helicase
T2SSE
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
13887437
NCBI-ProteinID:
XP_003958575
UniProt:
H2AYN4
LinkDB
All DBs
Position
8:complement(50720..53983)
Genome browser
AA seq
1087 aa
AA seq
DB search
MSKEQDLIDCVQKHTSSNVTPNFLDTLRRISAKNSTNVQGFIDSSKALGKFEGEESFLAE
LHCKLLNNETTSTGSKVAAKKRKVRLSYMNEGDDEEDDDGNEDFIVNPFLTKESPKVKST
SQIKFKKLDRGDAQRLKEYASPSVSSKVIPKPSTKNDQTSILNRFIPGRPKMGRNDTISE
TDREWYNYDDDYGNPVPQEESFISELQFKRPHLTSDIDVSNIHTQVQVDSLSINERKEWI
PQFLKVYTQERNISDSTILGSLAEQNAQDGLINPFKKPDGQFAINARKGSKLVNFKRISK
EQRAKAKESTAVAGTQLGNLLGLKESHEKREEDTTQHTTFENTPEDIESTRRSLPAFKVR
SDLLTMIRDNQISIIIGETGSGKTTQLAQYLYEDGFCSGGRLIGITQPRRVAAMSVANRV
ALEMNVQLGEEVGYSIRFEDYTSPKTRLKFMTDGILLRETLLDPELEKYGCIIIDEAHER
SLNTDIMIGILRNLLVKRRDLKLIVTSATMNAAKFSEFFGNAPQFTIPGRTYPVDIIYSK
NLVNDYVEAAVTEAVKIHLSNKISSGDILIFMTGQEDIEVCMDLIKEKLTEVYSKKFGIS
KFEEISDLEIFPLYSALPPALQNKIFRKLDDSRRKIVIATNIAETSLTIDGIRYVVDCGY
SKLKVYNPRIGLDSLAITPISRANANQRSGRAGRTSTGVAYRLYTEETLETEMYVSTIPE
LQRTSLQNTILLLKSLGVKDVLSFPLMDSPPLQTLLASLYDLWLINAIDNFGNLTSLGKL
MSKFPLQPSLARILITASYNDCSEEMLTIVSMLSVPQVFQRPKQREKEADLARSKFFVPG
SDHLTLLNVYSQWKQNKFSSQWCTKNFVQYRAMCKAHDIREQLVKIMGKNKVLLTSSGTD
WTIVKKCICSGFAHQAAKLSGLGKYVHMKTGMDVQLHPTSTLFGLGDPPSYVVYNELLMT
SKEYICCVTAVDPFWLVESGPLLYGIRRIDDDSSYHQSFALMQHKTGNDHAREKRQRDDI
EREINRCLEKRTQMIIQLQQDNKKAESLLKREHLDRTKLDGTGSFRIGLKKGDLPEYWWV
YVFNTYD
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagaacaggatttgatagattgtgtgcaaaagcatacatcttcaaacgtcaca
cccaattttttggacacacttcgaagaatttcagcgaagaattctacaaatgtacaaggg
ttcattgactctagcaaagctttaggtaaatttgaaggtgaagagtcatttttagccgag
ttacactgtaaattattgaataatgagactactagtactggtagcaaggttgcagcaaag
aagcggaaggtacgattgtcatacatgaatgaaggagatgacgaagaagatgatgacgga
aatgaagattttatagtaaatccatttctaaccaaagaatcgccaaaagtcaagtctaca
tctcaaataaagttcaaaaagcttgataggggtgatgcacaacgtcttaaagaatatgct
tctccaagtgtatcaagtaaggttatcccaaagcctagcacaaagaatgaccagacttct
atactgaaccgatttatacctggacgccccaaaatgggccgcaatgacactatatcagag
actgatagagaatggtacaattatgatgatgactatggtaatcccgtgcctcaagaagaa
tcctttataagtgaactacagttcaaacgtccacacctaacttcagatatagatgtgagc
aacatccatacacaagttcaggtggactcactgtctataaatgaaagaaaggagtggatt
ccgcagttcttgaaagtttatacacaggaaagaaacatttccgactcaacaattctaggt
tcattggctgaacagaatgcgcaagatggattaatcaaccctttcaagaaacctgatggc
caatttgcaattaatgctaggaaaggtagtaagttagttaatttcaaaagaatatcaaag
gagcaacgagctaaggcaaaagagagtactgctgtcgccggtactcaattgggtaatcta
ttaggtttgaaagagtcccatgaaaaacgagaagaggatacgacgcagcacacaactttt
gaaaatactcctgaggacattgaatctacccgtaggtcattacctgcgttcaaagtaaga
tcagatttgctcacgatgataagagacaaccagatttcaattattattggtgaaactggt
tctggtaaaacgacacaattagctcaatatttatatgaggacggtttttgctctggagga
agattaattggtattacacaaccacgtagggttgcagcaatgtcagtggctaacagagta
gcccttgaaatgaacgtacaattgggtgaggaggttggttattccattagatttgaagac
tacacatcccctaagaccaggctcaaatttatgactgacggtattcttctccgcgagaca
ttattagatccagaattagaaaagtatggctgtattataattgatgaggcccatgaacgg
tccttaaatactgacataatgattggtattttaagaaatttgctcgttaaaagaagggac
ttgaaactgatagtaacctctgcaacaatgaatgcagcaaaattttctgaattttttggt
aatgcccctcaatttactattcctggtagaacatatcctgttgatataatttattctaaa
aatctagtcaacgactacgtggaggctgctgtcactgaagctgtaaaaattcatttgtcc
aataagatctcaagcggagacatcctgattttcatgacaggtcaagaagatatcgaagta
tgcatggatttgattaaggaaaagctgacagaagtatatagcaaaaaatttggaatctcg
aaatttgaagaaataagcgaccttgagatctttcctctatactcagctttaccgcctgct
ctccaaaataaaatatttaggaagctggatgatagcagaagaaaaatagtaattgcgact
aatattgcagaaacctctttaactattgatgggattaggtacgtagtagactgtggttac
tcaaaacttaaagtttacaatccaagaatagggttggacagtttggccataactccaatc
tcccgggctaatgccaaccaacgttcaggaagagctggtcgtacttctactggtgtagca
tatagactctacaccgaagagacgttggaaactgagatgtacgtctccactattcctgag
cttcaaagaacaagtctgcaaaatacaatactacttttgaaatctcttggggtcaaagat
gttttaagcttcccattaatggattccccgcccttacaaacattgttagcctccttatac
gacctatggctcataaatgcgattgataattttggaaacttgactagtttggggaaatta
atgtccaaatttccattacaaccatctctagcaaggattttgattactgcttcctacaac
gattgtagtgaagaaatgttgactatagtgtcaatgctttcagtacctcaagtatttcaa
aggccaaaacaaagggagaaggaggcagatttggcaagaagtaagtttttcgtgcctgga
tctgaccatttaacacttttgaacgtttactcacaatggaagcaaaataagttctcttct
caatggtgtacaaagaattttgttcaatatagggcaatgtgtaaagcacatgatataaga
gaacagcttgtaaagattatgggaaagaataaagtgctattaacctcatccggtactgat
tggacaattgtaaaaaaatgtatatgttcaggttttgcacatcaggctgcaaaactttca
ggattgggaaaatatgttcatatgaaaacgggtatggatgtacagcttcatccaaccagt
accctatttggcctgggtgaccctccttcttacgtagtgtataatgagctgttgatgact
tcaaaagaatatatttgttgcgtcacagctgtggaccccttttggctggtagaatctggg
ccgcttttatatggcattagaaggatagatgatgatagttcatatcatcagtcatttgcc
ttaatgcagcacaaaactggtaacgatcatgctagagaaaagagacagagggatgatatt
gaaagagagataaacagatgtctagagaaaaggacgcaaatgattatacagttgcagcaa
gataataagaaggctgaatcattactgaagcgcgagcacttggataggaccaagcttgac
ggaacgggttccttcagaattgggctaaaaaaaggagacctgcctgaatattggtgggta
tacgtctttaatacatatgattga
DBGET
integrated database retrieval system
