Kangiella aquimarina: SR900_02035
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Entry
SR900_02035 CDS
T09621
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
kam
Kangiella aquimarina
Pathway
kam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR900_02035 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kam03019
]
SR900_02035 (rhlB)
Enzymes [BR:
kam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SR900_02035 (rhlB)
Messenger RNA biogenesis [BR:
kam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SR900_02035 (rhlB)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WQG85675
LinkDB
All DBs
Position
complement(422051..423310)
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AA seq
419 aa
AA seq
DB search
MDTSHLSTIRFSDLGLDPKLLKAVADLGFEYCTPIQAKTLPLLLKGQNVAGQAQTGTGKT
IAFLLGIMNDILTLPEIEGRRKNEPRSLIMAPTRELAVQIAKDAVQLGKYTDLKIRVVYG
GEDHEKQRQQLIDGVDILIGTTGRLIDYYKTKAFGLEAIDSVVLDEADRMFDLGFIKDIR
YLFNRMPPATDRLNMLFSATLSHRVQELAYEHMNNPQHVQIQAQQVTAKKIREALFYPSR
EEALPLLVGLMSRLQPEKAIVFTNTKRAAEHVWACLAGNDIKAELLTGDVHQKKRLRLLD
ELKNENVSVLVCTDVAARGLHIDGITHVFNYHLPDDAEDYVHRIGRTARAGAEGDAISFA
GEDFAMNLTAIEEYVGHPLPKLEIKPEYLATLKPSLPIQQKRRHPTQRRGGGKPRHPRN
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggatacatcgcatctatcgaccattagattttccgatctaggattagatcccaaattg
ctcaaggccgttgctgaccttggctttgaatattgcacgccgattcaggcaaaaactctt
cctttgttgctcaaaggtcaaaatgttgccggtcaggcacaaactggtaccggtaaaacc
attgccttcttattaggcatcatgaacgatattttaactttgcccgagatcgaaggccgc
cgaaaaaacgagccgcgctcactgattatggcacctactcgcgaattggcggtgcagatt
gccaaagatgctgtccagcttggtaaatataccgatctcaagattcgagtagtatatggg
ggcgaggatcatgaaaaacaacgccagcaactgatcgatggagttgatatcctgattggc
accactggtcgtctgattgattactataaaaccaaggcatttggcctggaagctattgat
agtgttgttctggatgaagccgatcgtatgtttgatcttggctttatcaaggatattcgc
tacttatttaatcgcatgcctccggccactgatcgtctcaacatgctattttccgcgacc
ttatcacaccgtgttcaggaattggcatatgagcatatgaacaatcctcagcatgtgcaa
atccaggcgcaacaggtcacggctaaaaagattcgcgaagccctgttctaccctagccgc
gaagaagctttgcccttgttagtgggcctgatgagccgcctgcagcctgaaaaagccatt
gtttttaccaatactaagcgagcagccgagcatgtctgggcctgtctggccggtaacgat
attaaggcagaattattgacgggtgatgttcatcagaagaaacgtctccgactattggac
gagttaaagaatgaaaatgttagcgtgctggtctgcactgacgttgctgcgcgtggctta
catattgatggcattacccatgtctttaattaccacttgcccgatgatgccgaagactat
gttcaccgcataggtcgaaccgctcgtgccggtgctgaaggtgatgcgattagctttgct
ggtgaagattttgccatgaacctgacagctatcgaagaatatgtcggccatcctttaccc
aaactggaaattaagcccgaatatctggccaccttaaagccttcactgcccattcagcaa
aaacgtcgtcatccgacacagcgcagaggcggtggaaagccacgtcaccctagaaattaa
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