Kaistella sp. 97-N-M2: L0B70_04585
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Entry
L0B70_04585 CDS
T08605
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kaq
Kaistella sp. 97-N-M2
Pathway
kaq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L0B70_04585 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kaq03400
]
L0B70_04585 (mfd)
Enzymes [BR:
kaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L0B70_04585 (mfd)
DNA repair and recombination proteins [BR:
kaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L0B70_04585 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF5691
Motif
Other DBs
NCBI-ProteinID:
UJF30669
LinkDB
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Position
complement(953996..957412)
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AA seq
1138 aa
AA seq
DB search
MQLKHIHETFLPNLLKNEFGATIFKNLEDYQHLSVRGFAGSSPSVFTAELFLTYKKTILF
LIEDREEALYVTAEMEDLLGKENVLYYPATHVDPYQIEKTQNANLVLRTEVLNKLNSGKK
PKVIVAGFSALAEKVLKKEDFKAISHLIKTGESLDFNFTEELLHQFNFNLTDFVSEPGEF
SVRGGIVDVFSYSNEQPYRITFFGNEIESIKTFDIETQLTNGKVNSFQLVSNMNFAVSGT
KVSLFELMPKDSFVVSKHAFLGLKKITDFYEKAEVKFETLNKDIRHQMPQELFLSAEVLM
NDYQKFRSIDFTLEQLKLDHISTAEIELSQTQQPTFHKNFELLVEDLKEKQHDQFEIWIS
FSTEKQKERLESIFEDLMRPPSEDSNVENGLDASSKIAFKSFKSELHEGFVDVDHKISVY
TDHQIFDRYQRFKAKNAFAKSEQITLKDLMQMKVGDYITHIDHGIGKFMGLVKVNNNGKI
QECFKLTYKNGDLLYVSIHSLHKISKFNGPDGKEIVLSKLGSPAWKSLKQKTKAKVKQIA
FDLIRLYAERKTAKGFAFTPDTYLQNELEASFIYEDTPDQEKATLDVKNDMENDNVMDRL
ICGDVGFGKTEIAIRAAFKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYMNR
FRTAKQKSETLAGLESGKIDIVIGTHQLVGTSVKFKDLGLLIIDEEHKFGVSVKDKLKTI
KNNIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETSIVGFNEEIIRDAISYE
IQRDGQVYFINNRIENLKDIAGLIQRLVPDARVITGHGQMEGKQLERNVLDFMEGKYDVL
VSTTIIESGVDVPNANTIFINDAQRFGMADIHQMRGRVGRSNRKAFCFLITPPFDMMTSD
ARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEE
LQNDEEFEDLFENEEDRKKLFKSTKEVNIDTDLELMLPDFFVQSIEERLSLYQKLADIQS
KEDLQKLESELVDRFGDLPSEAKNLIKSVELKWIAAEIGFDKIVVKNGVFLGYFPSNPQD
KFYQSDKFKNIIAYLSKNPREATLKEKSAKEGNQLMMRKENVQNVDEVNSVLERILGK
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaaacacatccacgaaacttttctgcccaatttgctgaaaaacgaatttggc
gctacaattttcaaaaatctggaagattaccaacatctttctgtgcgcggttttgcgggt
tcctcgccttccgtttttaccgccgaactttttttgacctacaaaaagaccatccttttt
ttaattgaagaccgcgaagaagcactttacgttacggctgaaatggaagatctgctgggc
aaagaaaacgttctctattatccggcgacgcacgtagatccttatcagatcgagaaaacc
caaaatgcgaatctggttttaagaaccgaagttttaaataaactgaattcaggaaaaaaa
ccgaaagtcattgtggcgggattttctgcgctggcggaaaaagttctgaagaaagaagat
ttcaaagccatttctcacctcattaaaacgggcgaaagtttagatttcaactttacggaa
gaacttctgcaccagttcaattttaatctgacggattttgtgtcggagcccggcgagttc
tccgtgcgcggcggaattgtggatgttttctcttactccaatgaacagccgtaccgcatt
acttttttcggaaacgaaattgaaagcattaaaacttttgatattgaaacgcagctgacg
aacggcaaagtgaacagttttcagctggtttcgaatatgaattttgcggtttcgggcacg
aaagtttcgctgtttgagctaatgccgaaagacagttttgtcgtgtcgaaacatgctttt
ttaggtctgaagaaaatcacggatttttatgaaaaagcagaagtgaagttcgaaacttta
aataaggacatccggcaccaaatgccgcaggaactgtttctgtctgcggaagttttaatg
aacgattatcaaaaattccgaagcattgatttcactttagagcaattaaaattagatcat
atttcgaccgccgaaatcgaactttctcagacgcagcaacccacttttcacaagaatttc
gaattgcttgtagaagatttaaaagaaaagcagcacgatcagtttgaaatatggatctcg
ttctccacggagaagcagaaagaaagacttgaaagtatttttgaggatctcatgcgaccg
ccttcggaagattcaaacgtggaaaatgggttggacgcctcctcaaaaatcgcctttaaa
tcatttaaatcggaacttcatgaaggttttgtagatgttgatcataaaatttctgtttat
acggatcatcagattttcgaccgttaccaaagatttaaagcgaaaaatgcttttgcgaaa
tcggagcagatcacgctgaaagacctcatgcagatgaaagtgggcgattatattacgcac
atcgatcacggcatcggaaaatttatgggtttggtgaaagtgaacaacaacggcaaaatt
caggaatgttttaaactaacgtataaaaacggcgatctgctttacgtaagcattcactcg
ctgcataaaatctcaaaatttaacggcccggacgggaaagaaatcgtgctgtcgaaactc
ggatcgcccgcctggaaatctttaaaacaaaaaacaaaagcaaaggttaagcagatcgcg
tttgacctcatccggctttatgcggaacggaaaacggcgaaaggatttgccttcacgccc
gacacttatctgcaaaatgaactggaagccagctttatttacgaagatacgccggatcag
gaaaaagccacgctggacgtgaaaaacgacatggaaaacgataacgtgatggatcgtttg
atctgtggcgatgtgggtttcggcaaaacagagatcgcgattcgggcggcttttaaagcg
gcgacagacggaaaacaggtagcgattttggtgcctacaacaattttggcctttcagcat
taccgcagtttcaaagaaaggctgaaagatttcccggtgaatatttcttacatgaaccgc
ttccgcaccgcgaaacagaaatccgaaaccttggccggtttggaaagcggaaagatcgat
attgtgattggaacgcatcagctggtgggaacttcggtgaagtttaaagacctgggactt
ttgattattgacgaggaacacaaatttggagtttcggtgaaagacaaactcaagaccatc
aaaaataatatcgatacgcttactttaaccgcaacgccgatcccgagaacgctgcagttt
tcgttgatggcggcacgggatctttcggtgattaaaacgccaccaccaaaccgtcagcct
gtggaaacgagtattgtaggtttcaatgaagaaattatccgcgatgcgatttcctatgaa
attcagcgcgacggccaggtttatttcatcaacaacagaattgaaaacctgaaagatatt
gcgggattaattcagcgtttggttccggatgcgagagtgattacgggccacggacagatg
gaaggaaaacagctggaacgaaatgttctggattttatggaagggaaatacgacgttctt
gtttccacaacaatcatcgaaagtggcgtggatgtgccgaatgccaacaccattttcatc
aacgatgcgcaaaggtttggcatggccgatattcatcagatgcgcggaagagtcggacgg
agcaaccgcaaggctttttgttttctcattacgccaccgtttgatatgatgacgtcggac
gcgcggaaaaggctggaagccatcgaacagttttcggatttgggaagcggctttcagatt
gcgatgaaagatctggagattcggggcgcgggcgatcttttaggcggcgaacagagcgga
tttattaacgaaatgggttttgatacgtaccaaaaaatcatgcaggaagctttggaagaa
ttgcagaacgatgaggaatttgaagacctgtttgaaaatgaagaagaccgcaagaagctg
tttaaatccacaaaagaagtcaatatcgatacggatctggaattgatgctgccggatttt
tttgtacaaagcatcgaagaacggctttcgctctatcaaaaactcgccgacattcagagc
aaagaagacttgcagaaactggaaagtgagttggtggatcggtttggcgatttaccgtcg
gaagctaaaaaccttattaaatcggtagagttaaaatggattgccgcggaaatcggtttc
gacaaaattgtggtgaagaacggcgtttttctcggatatttcccgtctaatccgcaggac
aaattctatcaaagcgataaatttaaaaatattatagcctatttaagcaaaaatccgcgg
gaggcgacgttaaaagaaaaaagtgcgaaagaaggcaatcaactgatgatgcgcaaagaa
aatgtgcagaatgtggatgaggtgaattcggttttggaaaggattttggggaaataa
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