Kitasatospora aureofaciens: B6264_08475
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Entry
B6264_08475 CDS
T05021
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kau
Kitasatospora aureofaciens
Pathway
kau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B6264_08475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kau03400
]
B6264_08475
Enzymes [BR:
kau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B6264_08475
DNA repair and recombination proteins [BR:
kau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B6264_08475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ARF78948
LinkDB
All DBs
Position
complement(1984707..1988339)
Genome browser
AA seq
1210 aa
AA seq
DB search
MSLTGLLDVVARDAALAEAIEAATATGAAAGGRRHLDLVGPPAARPFAIAALARALAGHA
AGERGRPVLAVTATGREAEDLAASLRSLLPPDAVAEYPAWETLPHERLSPRSDTVGRRLA
VLRRIVHPRADDPAAGPVQVIVAPVRSVLQPQVKGLAELEPVAVGRGESHDLEEVARRLA
AAAYARVELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIA
EHGLWAPPCRELLLTDEVRARAAELSAEQPGLAEILDKIAEGIAVEGMESLAPVLVDDME
LLVDVLPLGSVAVVCDPERVRTRAADLVATSQEFLQASWVAAAAGGDRPIDLETIDVSAA
SLRSLAEVREHAAEIGLPWWSVSPFATSESTVDTILEFDANTLTLGMHAVEAYRGDTARA
IADAKERLAADWRVVMVTEGHGPASRLAEVLGNEGIPARLVADLAEAPTRDVVYVACGSI
EHGFVDEALKLTVITETDLSGQKSSTKDMRRMPSRRRNAIDPLALVAGDYVVHEAHGVGR
YVEMVQRTVQGATREYLVLEYAPAKRGHPGDRLFVPTDQLDQVTKYVGGEAPTLHRLGGA
DWAKTKQRAKKAVKEIAADLIRLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTT
IAEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFST
FAERYANFPVTVKALSRFQTDSEAKAVLEGLFEGSVDVVIGTHRLFSSETRFKDLGLVIV
DEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLT
FVGPYDEKQISAAIRRELLREGQVFYIHNRVESIDKAAARLKDLVPEARIATAHGQMGET
QLEKVVVDFWEKEFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRE
RGYAYMLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIA
GVGFDLYMRMVGEAVAEFRESLANGGAEPEEEPLEVKIELPVDAHVPHDYAPGERLRLQA
YRSIAAVNSEADIQQVRDELVDRYGKLPEPVENLLLVAALRLYARRCGISDITLQGSNVR
FGPVELRESQQLRLNRLYPRSQVKAAAQQLLVPRPSTGRIGGRPLVGRELLDWCTEFLSA
MFDDLAGAKK
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccggactgctcgatgtcgtcgcgcgggacgcggcgctcgccgaggcgatc
gaggcggccaccgccaccggagccgcggccggcggccgccgccacctggacctggtcgga
ccgcccgccgcccggccgttcgcgatcgccgcgctggcccgggcgctggccgggcacgcc
gccggcgagcggggccgtccggtgctggccgtcaccgccaccggccgggaggccgaggac
ctggccgcctcgctgcgctcgctgctgccccccgacgcggtcgccgagtacccggcctgg
gagaccctgccgcacgagcggctgtcgccccggtcggacaccgtcggccgccggctggcc
gtactgcgccggatcgtgcacccgcgggccgacgacccggcggccggtccggtgcaggtg
atcgtcgccccggtccgctcggtgctccagccgcaggtcaaggggctggccgagctggag
ccggtggccgtcgggcgcggggagtcgcacgacctggaggaggtggcccgccggctcgcg
gcggccgcctacgcgcgggtcgaactggtcgagaagcgcggcgagttcgccgtccgcggc
ggcatcctggacgtcttcccgccgaccgaggagcacccgctgcgggtggagttctggggc
gacgacgtcgaggagatccgctacttcaaggtcgccgaccagcgctcgctggagatcgcc
gagcacggcctgtgggcgccgccctgccgtgagctgctgctgaccgacgaggtgcgcgcg
cgggccgccgaactgtccgccgagcagcccgggttggccgagatcctggacaagatcgcc
gagggcatcgcggtcgagggcatggagtcgctggcgccggtgctggtggacgacatggag
ctgctggtcgacgtgctgccgctcggctcggtcgcggtggtgtgcgacccggagcgggtc
cgcacccgggccgccgacctggtggccaccagccaggagttcctgcaggcctcctgggtc
gccgcggcggccggcggggaccggccgatcgacctggagaccatcgacgtctccgccgcc
tcgctgcgctcgctcgccgaggtgcgcgagcacgccgccgagatcgggctgccctggtgg
tccgtcagcccgttcgcgaccagcgagtccacggtcgacaccatcctggagttcgacgcc
aacacgctgaccctcggcatgcacgccgtcgaggcctaccggggcgacaccgcccgggcg
atcgccgacgccaaggagcggctggccgccgactggcgggtcgtcatggtgacggagggc
cacggcccagcctcccgcctggccgaggtactcggcaacgagggcatcccggcccggctg
gtcgccgacctcgccgaggcgcccacccgggacgtcgtgtacgtcgcctgcggctccatc
gagcacggcttcgtcgacgaggccctcaagctcaccgtcatcaccgagaccgacctgtcc
ggccagaagtcctccaccaaggacatgcgccggatgccgtcccgtcggcgcaacgcgatc
gacccgctggccctggtggccggcgactacgtggtgcacgaggcgcacggcgtcggccgg
tacgtggagatggtgcagcgcaccgtccagggcgccacccgcgagtacctggtgctggag
tacgcccccgccaagcgcggccaccccggcgaccggctgttcgtgccgaccgaccagctc
gaccaggtcaccaagtacgtcggcggcgaggccccgacgctgcaccggctcggcggcgcg
gactgggcgaagaccaagcagcgggccaagaaggcggtcaaggagatcgccgccgacctg
atcaggctgtactcggcgcggatggcggcgcccggccacaccttcggcccggacaccccg
tggcagcgtgagctggaggacgccttcccgtacgcggagacgccggaccagctgaccacc
atcgccgaggtcaaggccgacatggagaagtccgtcccgatggaccggctgatctgcggc
gacgtcggctacggcaagaccgagatcgccgtccgggccgccttcaaggcggtgcaggac
ggcaagcaggtggcggtgctggtgccgaccacgctgctggtgcagcagcacttctccacc
ttcgccgagcgctacgccaacttcccggtgacggtgaaggcgctgtcccgcttccagacc
gacagcgaggccaaggccgtcctggaggggctgttcgagggctcggtggacgtcgtcatc
ggcacccaccggctgttctcctccgagaccaggttcaaggacctcggcctggtcatcgtc
gacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaac
gtggacgtgctcaccatgtccgcgacgccgatcccgcgcaccctggagatggcggtcacc
ggcatccgtgagatgtccaccatcaccaccccgccggaggagcgccacccggtgctgacc
ttcgtcgggccgtacgacgagaagcagatctcggccgcgatccggcgtgaactcctgcgc
gagggccaggtgttctacatccacaaccgggtggagtcgatcgacaaggcggccgcgcgg
ctgaaggacctggtgcccgaggcgcggatcgccaccgcgcacgggcagatgggggagacc
cagctggagaaggtcgtcgtcgacttctgggagaaggagttcgacgtcctggtgtcgacc
acgatcgtggagtccggcatcgacatctccaacgccaacaccctgatcgtcgagcgcggc
gacaccttcggcctctcccagctgcaccagctgcgcggccgggtcggccgcggccgggag
cgcggctacgcgtacatgctgtacccgccggagaagccgctcaccgagaccgcgcacgag
cgcctggccaccatcgcccagcacaccgagatgggcgccggcatgtacgtcgcgatgaag
gacctggagatccgcggcgccggcaacctgctcggcggcgagcagtccgggcacatcgcg
ggcgtcggcttcgacctctacatgcggatggtcggcgaggcggtggccgagttccgcgag
tcgctggccaacggcggcgcggagccggaggaggagccgctggaggtgaagatcgagctg
ccggtcgacgcccatgtgccgcacgactacgcgcccggcgagcggctgcggctgcaggcc
taccgctcgatcgcggcggtcaactcggaggcggacatccagcaggtccgggacgaactc
gtggaccgctacgggaagctgccggagccggtggagaacctgctgctggtcgccgcactg
cggctgtacgcccggcggtgcgggatctcggacatcaccctccagggctcgaacgtccgc
ttcggcccggtggagctgcgtgagtcccagcagctgcggctgaaccggctctacccgcgc
agccaggtcaaggcggcggcccagcagctgctggtgccgcggccgagcaccgggcgcatc
ggcggcaggccgctggtcgggcgggagctgctggactggtgcaccgagttcctgtcggcg
atgttcgacgacctggcgggggcgaagaagtag
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