Kitasatospora aureofaciens: B6264_28835
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Entry
B6264_28835 CDS
T05021
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kau
Kitasatospora aureofaciens
Pathway
kau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B6264_28835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kau03400
]
B6264_28835
Enzymes [BR:
kau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B6264_28835
DNA repair and recombination proteins [BR:
kau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B6264_28835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_primase_S
PNKP_ligase
Motif
Other DBs
NCBI-ProteinID:
ARF82349
LinkDB
All DBs
Position
complement(6587785..6589614)
Genome browser
AA seq
609 aa
AA seq
DB search
MPQMTVDGRTLALSHLDKVYYPRVGTLKGDVLRYYAAVHTVLLPHLRDRPVSFLRCPDGV
EAEVFVAKNPPPGTPEWVRTVDVPSTGGELRQVVLEDGAALLAVANLGCLELHVPQWHAA
APALADRLVLDLDPGEGANVLTCRAVALLLRERLAADGLSAWVKTSGSKGLHLLVPIEPT
PSATVSGYAKALAAALEVEHPDLVVHTMAKARRRGRVLVDWSQNNAKKTTAAPYTLRARP
LPTVSTPLSWGELERASGETELVFTLAELPGRLAAHGDLFAPLLDPEQARPLPAAPTARE
APAAPTARAPAPEQPRQVLQPPVEVMRPAAVTAVPPADGLGGGGVQYELKLDGFRCVAFA
RGDRPAFLQSRSGRDLAPEFPPIAAAVARLPEGLVLDAELVAWRAGRFAFEELLHTRQAR
AAAADVVLGLIAFDLLALPGRDVRRLPLTDRRRLLLAALADVPPPIQPVMATTDRTEALE
WVEQLADTGVEGLVCKAAASPYRARGAGRAWVKYRRSDTLDATVRALTGPASRPYALVLQ
LDDGRVFLTTPRLTPVQAREVAQVAGPLLGPPATDPDHGRVHPLTGPLRAELTLTGRPPT
ATFVRLRGD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagatgacggtggacggacgcaccctcgccctgtcccacctcgacaaggtgtac
tacccgcgcgtcggcaccctgaagggcgacgtgctgcgctactacgccgccgtgcacacc
gtcctgctcccccatctgcgcgaccgcccggtgtccttcctacgctgcccggacggtgtg
gaggcggaggtgttcgtcgccaagaacccgccgccgggcaccccggagtgggtgcgcacg
gtggacgtgcccagcaccggcggcgagctgcgccaggtggtgctggaggacggcgcggcg
ctgctggcggtcgccaacctgggctgcctggaactgcacgtcccgcagtggcacgccgcc
gcgccggccctggcggaccggctggtcctggaccttgatccgggcgagggcgcgaacgtc
ctcacctgccgggcggtcgcgctgctgctgcgcgagcggctggccgcggacgggctgtcg
gcctgggtgaagacctccggctccaagggcctgcacctgctggtgccgatcgagccgacg
cccagtgccacggtctccgggtacgcgaaggcgctggccgccgcgctggaggtcgagcac
ccggacctggtggtgcacaccatggccaaggcccgccgccggggccgggtgctggtcgac
tggtcgcagaacaacgccaagaagaccaccgccgctccgtacaccctgcgcgcccggcca
ctgccgacggtctccaccccgctgtcctggggcgagctcgaacgggcgagcggggagacc
gagctggtcttcacactcgccgagctgccgggacggctggcggcgcacggcgacctgttc
gcgccgctgctggaccccgagcaggcccggccgctgcccgccgcacccacggcccgggag
gcgcccgccgcacccaccgcccgggccccggccccggagcagccccggcaggtgctgcag
ccgcccgtcgaggtgatgcgccccgccgccgtcaccgccgtgccgcccgccgacgggctg
ggcgggggcggcgtgcagtacgagctgaagctggacggcttccgctgcgtcgccttcgcc
cgcggtgaccgtccggcgttcctgcagtcccgcagcggccgcgacctcgcccccgagttc
ccgccgatcgccgccgccgtcgcccggctgccggaggggctggtgctggacgccgagctg
gtcgcctggcgggccgggcggttcgccttcgaggagctgctgcacacccgccaggcccgg
gccgctgcagcggacgtggtgctcgggctgatcgccttcgacctgctcgccctgcccggc
cgcgacgtccggcgcctgccgctcaccgaccggcgccgcctgctactggccgccctggcc
gacgtcccgccgccgatccagccggtgatggccaccacggaccggacggaggcgctggag
tgggtggagcagctggccgacaccggcgtggagggcctggtctgcaaggccgcggcctcc
ccctaccgagcgcgcggcgcgggccgcgcctgggtcaagtaccggcgcagcgacaccctg
gacgccaccgtccgcgccctcaccggtccggcctcccggccgtacgcgctggtgctccaa
ctcgacgacggccgggtgttcctcaccacccccaggctcacccccgtccaggcccgcgag
gtcgcccaggtcgccgggccgttgctcgggccgcccgcaaccgaccccgaccacggccgg
gtgcacccgctcaccggcccgctgcgcgccgaactcaccctcaccgggcgcccgcccact
gccaccttcgtccggttgcgcggggactga
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