Candidatus Kaistella beijingensis: J4771_07890
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Entry
J4771_07890 CDS
T07870
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kbe
Candidatus Kaistella beijingensis
Pathway
kbe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4771_07890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kbe03400
]
J4771_07890 (mfd)
Enzymes [BR:
kbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4771_07890 (mfd)
DNA repair and recombination proteins [BR:
kbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4771_07890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF2663
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
UBB88798
LinkDB
All DBs
Position
complement(1695913..1699290)
Genome browser
AA seq
1125 aa
AA seq
DB search
MALKKINENFLPNLLQNEFGKELFSQIEDSKHFSVKGFAGSSPSVFAAELFLIKKKSLLF
LTDDKEEALYITDELEDLLGKENVLYFPPTHLEPYQIEKTQNANLVLRTEVLNRIHNDKK
PRVMVAPFASLAEKVMKKEDFKAISHTIKVGEKLDFDFTEELLHQFNFNVTDFVSEPGEF
SVRGGIVDVFSYSNEEPYRITFFGNEVESIKTFDIETQLSKEKIKEFQLVSNMNFSVVGS
KVSLLDLAPKDLIVLTKNAFLGFNFIKNFYEKAEEKFETLSKEIKHQKPEELFVSEEQFR
DNLEKFQWIDFTSQSLNSSNTQLHLNQTPQPTFNKNFELLIDDLENKLADNFDIWISFST
EKQKERLESIFEELGRFDSAQRDIPFKSFKSELHEGFVDLDHKISVYTDHQIFDRYQRFK
AKNTFAKSEQLTLKDLMQMKVGDYIAHIDHGIGKFMGLVKVNNNGKVQECFKLVYKNNDL
LYVSIHSLHKISKYNGPDGREIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAQRKTA
KGFAFTPDSYLQNELEASFIYEDTPDQEKATFDVKKDMENDTVMDRLICGDVGFGKTEVA
IRAAFKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNISYLNRFRTAKQKSETLEG
LKNGKIDIVIGTHQLVGNSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNIDTLTLTATP
IPRTLQFSLMAARDLSVIKTPPPNRQPVETQIIGFNEEIIRDAIAYEIQRDGQVYFINNR
IENLKDIAGLIQRLVPDAKVITGHGQMDGKQLEQNVLDFMEGKYDVLVSTTIVESGVDVP
NANTIFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTTDARKRLEAIEQFSD
LGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEELQNDEEFEDLFDN
EEDRKKLFKSVKEVNIDTDLELMLPDSYVSSVEERLSLYQKLAEIQSKEELQKFENELID
RFGNLPKEAKNLLKSVELKWIAAEIGFDKIVVKNGIFLGYFPPNPQDKFYQSDKFRHIIS
YLNQNPKEATLKEKHSAEGNQLMMRKENVQHVDEVNAVLERILRN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggctttaaaaaaaatcaacgaaaactttcttccgaaccttcttcagaacgaatttggg
aaagaactattcagtcaaatcgaggatagcaaacatttttccgtaaaaggttttgcaggt
tcttcaccatcggtttttgctgccgaactttttctgattaaaaagaaatcgcttcttttt
ttgaccgatgataaggaagaagcgctttacattaccgacgaactcgaagatttgctggga
aaagaaaacgtactttattttccaccgacgcatttggagccgtatcaaatcgagaaaacg
cagaatgcgaatttggttttaaggacggaagttctgaaccgaattcacaacgacaaaaaa
ccaagggtgatggtcgctcctttcgcttctttggcggaaaaagtaatgaagaaagaagat
ttcaaggcgatttctcacaccataaaagtgggcgaaaagctcgatttcgattttacggaa
gaattgctgcatcagtttaatttcaacgtaacggattttgtttcagaacctggagaattt
tctgttcgtggcggaattgtggatgttttttcttactcgaatgaagaaccgtaccgaatc
acttttttcggaaatgaggtggaaagtatcaaaactttcgatattgaaactcaattgtca
aaggagaaaattaaggaattccaattggtgtccaacatgaatttttcggtggttggctct
aaagtttctttgttggatttggctcccaaagatttgattgttttaactaaaaacgctttt
ctcggatttaatttcattaaaaatttttatgaaaaggcggaagaaaaatttgaaacttta
agtaaagaaatcaagcatcaaaaacctgaggaactttttgtttccgaggaacagttcaga
gataatttggaaaaatttcaatggattgatttcacatctcaatcgctcaacagttcaaat
acacaattacatttaaaccaaactccacaacccacttttaacaagaatttcgagttgctg
atcgatgatttggaaaacaaacttgcagacaatttcgacatttggatttccttttccacc
gaaaaacagaaggaaagattggaatctatttttgaagaattaggacgcttcgactccgct
cagcgtgacattccttttaaatcctttaaatctgagcttcacgaaggttttgtggatttg
gaccataaaatttcagtgtacaccgatcaccaaattttcgaccgttatcaaagatttaag
gccaaaaatacgtttgcaaaatccgagcaacttactttgaaggatttgatgcagatgaaa
gttggcgattatattgcacacatcgatcacggaatcgggaaattcatgggtttggtgaaa
gtgaacaacaacggaaaagttcaggaatgtttcaaattggtttataaaaacaatgatctg
ctttacgtttcgattcattcactccacaaaatatcgaaatacaatggtccagacggaaga
gaaattgtgctttcaaaactcggttctccggcgtggaaatctttaaaacaaaaaactaaa
gcgaaggtaaaacagattgctttcgacttgataaaattgtacgcacagagaaaaaccgcg
aaaggatttgcgtttactcccgattcttatctgcaaaacgaactggaggcaagttttatt
tacgaagatactcccgatcaggaaaaagcgactttcgatgttaaaaaagacatggaaaat
gacaccgtgatggatcgtttgatttgcggtgacgtgggtttcgggaaaacggaagtggca
attcgtgcggcgttcaaagcggcaaccgacggaaaacaagtcgcggttttggttccgacc
acgattctggcttttcaacattaccgaagtttcaaggaacgattgaaagattttccggtg
aatatttcctacctgaaccgtttcagaactgcaaaacaaaaatctgaaactttagaaggt
ttgaaaaatggaaaaatcgacatcgtcataggaacccatcaattggttggaaacagtgtg
aaatttaaggatttaggacttttaattattgatgaagaacataaattcggagtctcggta
aaagacaaattgaaaactttaaaaaataatatcgacacgttgactttaacggcgactcca
attcccagaactttgcagttttctttaatggcggcgagagatttatcggtgattaaaacg
ccacctccgaacaggcaacctgttgaaacacaaattattggttttaatgaagaaatcatt
cgtgatgcaattgcgtacgaaattcaaagagacggacaagtgtatttcatcaacaaccga
attgaaaacctgaaagatattgcgggattgattcagcgattggttcccgatgcgaaagtg
attacaggtcacggacaaatggatggaaagcaattggagcaaaatgttttggattttatg
gaaggaaaatatgacgttttagtttccacaaccatcgtcgaaagtggagtagatgttccg
aatgcgaacacgattttcatcaacgatgcacaacgtttcgggatggcagatttgcaccaa
atgcgtggaagagtgggacgaagcaaccgaaaagcgttttgttatctgataacgccgcca
ttcgatatgatgacgactgacgcgaggaaacgtttggaagcgattgagcaattttcggat
ttgggaagtggtttccagattgcgatgaaagatttggaaattcgtggagcgggagatttg
ttgggcggtgaacaaagtggtttcattaatgaaatgggattcgatacgtaccaaaaaatt
atgcaggaagcgttggaagaattgcagaacgatgaggaattcgaggatttgtttgataat
gaggaagaccgtaaaaaattatttaaatcggtgaaagaagtcaatatcgacacggatttg
gaattgatgcttcctgattcgtatgtttcgagcgtggaggaacgactttcgctttaccaa
aaattggcagaaattcagagcaaagaagaacttcaaaagtttgagaatgaattgattgac
cgtttcggaaatttaccaaaagaagccaaaaatttgttaaaatctgttgaattaaaatgg
attgccgcagaaatcggtttcgataaaatcgtggtgaaaaacggaattttcttgggctat
tttccaccgaatccgcaagataagttttatcaaagcgataagtttagacatattatttct
tatttaaaccaaaatccaaaagaagcaactttaaaggaaaaacattctgcggaaggaaat
cagttgatgatgaggaaggaaaatgttcagcatgtggatgaggtgaatgcggttttggag
aggattttaagaaattaa
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