Candidatus Kinetoplastibacterium blastocrithidii TCC012E: BCUE_0762
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Entry
BCUE_0762 CDS
T02463
Name
(GenBank) superfamily II helicase transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kbt
Candidatus Kinetoplastibacterium blastocrithidii TCC012E
Pathway
kbt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCUE_0762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kbt03400
]
BCUE_0762
Enzymes [BR:
kbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCUE_0762
DNA repair and recombination proteins [BR:
kbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCUE_0762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Proteasome_A_N
Motif
Other DBs
NCBI-ProteinID:
AGF49918
UniProt:
M1LBU0
LinkDB
All DBs
Position
536710..540168
Genome browser
AA seq
1152 aa
AA seq
DB search
MNFTDKSYISNITKNLLQMLKKGSKYFYERPFGSGTPMLIANMAINSKKLITVFTSNSLE
AKQISSDIKVFSPGLRVATMPDWEILPYDEFSPSNRIISERIKILHELLNKNIDVLTISI
TTAMHNISPPEFIAAYSFYFNKSDVINENNLKKQLEIANYKHVTQVRNFAEFCTRGNIID
IFPMGSITPYRIDLYDDTIESIRLFDPETQCSTGFIEKIEVLPGKEFPLDDQARKIFRTK
FREYFEGDPSKYSIYKEVGKGCYFQGMEYYLPFFFENTATIFEYLSSDSICIITNNIDNI
IDIYHSDINERYNFLKHDIERPIISPDNLFLTKESFNKKAKNFKQLSFKTLKNDYFTEIE
SLNNANLKSNWLEEIIKIINLNSECKILIFINSEKRIDLLQNRINSDTKFKASYPSSIQE
FINNNERCGLILAQISTSFRFSPNNLLVIAENSILNTENHNNHIIKRDNKKSRNIDAIVN
DISEISIGDPIVHNQHGIGRYNGLVHMQANGTEMELLQIEYANKASLYVPISHMHVVSRY
IGTDVESAPLNQLGSDQWEKKCKKAAKQIHDTATELLNLYAQRNNNKYGFSFKVQKEEYR
KFSDEFGFEETIDQINAINDVINDMVSEKSMDRLICGDVGFGKTEIALRAAFIAVSNNKQ
VSILCPTTLLSEQHTQTFINRFENWPVRIAELSRFKTKKEILQNIHDINNGNIDIVIGTH
KVLSKDVKFKNLGLVIIDEEHRFGVRQKELLKKTRPHVDVLTLSATPIPRTLGMSLEGIR
DFSIIATAPKKRLSIKTFIRKYNKNVIREAITRELRRSGQVYFLCNEVSTIENKKQSLET
IIPEAKIAIAHGQLHERDLESVMKAFYKGYYDILLCTTIIETGIDIPNANTIIIDHADNF
GLAQLHQLRGRVGRSYHQAYAYLLTQDEETITSQAKKRLEAIQKMEELGSGFYLAMHDLE
IRGAGEILGESQSGNNIHEIGYSMYNEILKSAIESIKNGKDYDLVNKNLQYCEVNIHEAA
LLPDRYCSDIPSRLEIYKRLSHTCDIDDLTIIKNELIDRFGKLPIQTENLILIHKIRINA
QSSYINEIDMSDKKITIKFHEKSNINPAKLIEIYKNSKILKFQPDNKVFINLSIPNIKER
SNEVLKIIKFLK
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaattttacagacaaatcttatatatctaatataactaaaaacttgttgcaaatgcta
aaaaaaggcagtaagtatttttatgaaagaccatttggatctggaacacctatgttaata
gctaatatggctattaacagtaaaaaactaattacggtattcacaagcaattctttagaa
gcaaaacaaatatcatctgatataaaagtattttcaccaggtttgcgtgtagccacaatg
ccagattgggagatattgccttatgatgaattttctccaagcaatagaataatctcagag
aggataaaaatcctacatgaattattaaataaaaatattgatgtattaacaatatctatt
acaacagctatgcataatatttccccaccagagttcatagcagcatatagtttttatttc
aataaaagtgatgtaataaatgaaaacaatcttaaaaaacaattggaaatagctaactat
aagcatgtaactcaggttagaaactttgcagaattttgcacaagaggaaatattattgat
atcttccctatgggatctataactccatatagaatagatctgtatgacgacactatagag
tcgataagattatttgatcctgagacacagtgcagtactggatttattgaaaagatagaa
gtattaccaggaaaagaatttccattagatgaccaagcaagaaaaatatttaggactaaa
tttagagaatattttgaaggagatccatcaaaatattcaatatataaagaagttggaaaa
ggatgttatttccaaggtatggaatactatctcccatttttttttgaaaacacagctact
atatttgaatatctatcaagtgatagcatatgcataatcacaaataatatagataatatt
atagatatataccattcagatataaatgaacgatataactttttaaaacatgatatagaa
aggcctataatatctccagataatctttttttaactaaagaatcattcaataaaaaagct
aaaaattttaaacaattatcatttaaaacattgaaaaatgattattttacagaaatagaa
agcctaaataatgctaatctaaaatcaaactggctagaagaaataattaaaattatcaat
ttgaatagtgaatgtaaaatacttatatttataaattcagaaaaaagaatagatttatta
caaaatagaattaactcagatactaaatttaaagcaagttacccatcttctatacaagaa
ttcattaataataatgaaagatgtggattaatacttgcacaaataagcacaagttttaga
ttctcacctaacaatcttcttgtaattgccgaaaatagcattttaaatactgaaaatcat
aataatcatataataaaacgagataacaaaaaatcacgtaacatagatgctatagtaaac
gatatttcagaaattagcataggagaccctatcgtacataatcaacatggaataggaaga
tataatggcttagtacatatgcaagctaatggaactgagatggagctcttacaaatagaa
tacgctaataaagcttctttatatgtacctatatctcatatgcatgttgtttcaagatat
ataggaactgatgtggaatcagcaccattaaatcagctaggatctgatcaatgggaaaaa
aaatgcaaaaaagctgcaaaacagattcatgatacagctacagaactactgaatttatat
gctcaacgcaataataataaatatggatttagttttaaagtgcaaaaggaagaatataga
aaattctcagatgaatttggttttgaggaaaccatagatcaaataaatgctattaacgat
gttataaatgacatggtatctgaaaaatcaatggatagactaatctgtggagatgtgggt
tttggaaaaacagagattgcactaagggcggcttttatagcagtatctaataacaagcaa
gtttctattttatgtccgacaactttgctatcggagcaacatactcagacatttataaat
agatttgagaattggcctgtacgcatagcagaattatctagattcaaaacaaaaaaagag
attcttcagaatattcatgatataaataatggcaatatagacatagttataggaacacat
aaagttttatctaaagatgtaaaatttaaaaatctaggactagttataatagatgaagag
catcgttttggtgtgcggcaaaaagaactgctaaaaaaaacaagaccacatgttgacgta
ctaacattaagcgcaactcctattccaagaacattaggaatgtccctagaaggaatcaga
gacttttctataatagcgacagcccccaaaaaaagactatctataaaaacatttataagg
aaatataataaaaatgttataagagaagctataacacgagaacttagacgaagtggtcag
gtatattttttatgtaatgaagtaagtactattgaaaataaaaaacaatcattagaaact
ataatacctgaagcaaagattgcaattgctcatggtcaactgcacgagagagatcttgaa
agtgtaatgaaggcattctataaaggttactatgatattttattatgtacaacaattata
gaaacaggtatagatattccaaatgctaatactataatcattgatcatgcagacaatttt
ggtttagctcaattacatcaacttagaggaagagttggtaggtcctatcatcaagcttat
gcctacttactaacccaagatgaagaaacaataactagtcaagcaaaaaaaagattagag
gcaatacaaaaaatggaggaattaggatcaggattttacctggccatgcatgacttagaa
ataagaggagcaggagaaattttaggagagtctcaatctggtaataatatacatgagatt
ggttattctatgtataacgaaatactaaaaagcgccattgaatctataaaaaatggaaaa
gattatgatcttgttaataaaaacttacaatactgtgaagtaaatatacatgaagcagca
ctattgccagatagatattgttctgatatcccatcaagattagaaatttataaacgattg
tctcacacttgtgatatagatgatctaactatcatcaagaatgaactaatagatagattt
gggaaactacctatacaaacagaaaatttaattctaattcataaaattagaattaatgct
caatcttcttatataaatgaaattgatatgtctgacaaaaaaataacaattaaatttcat
gaaaaatctaatataaatccggccaaattgatagaaatatataaaaattcaaaaatactt
aaatttcaaccagataacaaagtatttataaatttatccataccaaatataaaagagaga
tcaaatgaagtattaaaaataattaaatttctgaaatag
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