Kaistella daneshvariae: EIB71_03555
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Entry
EIB71_03555 CDS
T06920
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kda
Kaistella daneshvariae
Pathway
kda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EIB71_03555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kda03400
]
EIB71_03555 (mfd)
Enzymes [BR:
kda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EIB71_03555 (mfd)
DNA repair and recombination proteins [BR:
kda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EIB71_03555 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZI66805
LinkDB
All DBs
Position
complement(792857..796219)
Genome browser
AA seq
1120 aa
AA seq
DB search
MQLKKITETFLPQLLHLGFGKELFTQLEEHRHLAVKSFAGSSPAVFAAELFLIKKKSILF
LTDDKEDALYITSELEDLLGKENVLYFPPTHLDPYQIEKTQNANLVLRTEVLNRIHNDKK
PRVMIAPFASLAEKVMKKDDFKAISHTIKAGDQLDFDFTEELLHQFSFNLTDFVSEPGEF
SVRGGIVDVFSYSNEEPYRITFFGNEVESIKTFDIETQLSKAKIKEFQLVSNMNFSAIGK
KVSLFDLAPKDLVVVTKNAFAGLNFIKNFYEKAEERFGTLSTEIKHQTPEELFISEEDFS
KDINKFEWIDFTLQEVKNSDAAVIQLNQTPQPSFHKKFDMLQEDLEEKQNEGFETWISFS
TEKQKERLEAIFEELEKNVPFKSFKSELHEGFVDFEHKISVYTDHQIFDRYQRYKAKNTF
AKSEQITLKDLMQMKVGDYIAHIDHGIGKFMGLVKVNNNGKIQECFKLVYKNGDLLYVSI
HSLNKISKYNGPDGREIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIRLYAERKTAKGFAF
KPDSYLQNELEASFIYEDTPDQEKATIDVKTDMENETVMDRLICGDVGFGKTEIAIRAAF
KAATDGKQVAILVPTTILAFQHYRSFMERLKDFPVTISYMNRFRSAKQKAETLEGLKSGK
IDIVIGTHQLVGNSVKFKDLGLLIIDEEHKFGVSVKDKLKTIKSNVDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVETQIVGFNEEIIRDAISYELQRDGQVYFINNRIENLK
DIAGLIQRLVPDAKVITGHGQMDGKQLERNVLDFMEGKYDVLVSTTIIESGVDVPNANTI
FINDAQRFGMADIHQMRGRVGRSNRKAFCFLITPPFDMVTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEELQNDEEFEDLFDNEEDRK
KLFKSNKEVNIDTDLELMLPDSYVQSIEERLSLYQKLAEIESKEELKKMESELIDRFGKL
PPEAVNLLKSVELKWIASEIGFDKIVVKNGVFLGYFPQNPQDKFYQSEKFRKIIAYLTAY
PSEATLKEKSSKEGNQLMMRKENVQNVDEVNAVLERILAK
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaagaaaatcaccgaaacatttttgcctcaattacttcacttgggatttggc
aaggaacttttcacgcaacttgaggagcaccggcatttggcggtgaaatcgtttgcaggt
tcttcgccggcggtttttgcggcggagctttttttaatcaagaaaaaatcaattcttttt
ctgaccgatgataaggaagatgcgctgtacatcacttcggagctggaagatttgctcgga
aaagaaaacgtgctgtattttccgccaacgcatttggatccctatcaaattgaaaaaacg
caaaatgccaacttggttttgcgtacagaagttttaaaccgcatccacaacgacaaaaaa
ccgcgcgtgatgattgcgccgtttgcttcacttgcggaaaaggtgatgaaaaaagatgat
tttaaagcgatttcgcataccattaaagccggtgatcaactcgattttgattttacagaa
gaattgttgcatcagtttagttttaatctgacagattttgtttctgaacccggcgaattc
tctgtgcgtggcggaattgtagacgttttttcgtattctaatgaagaaccgtaccgcatt
acttttttcggaaatgaggtggaaagcatcaaaacttttgatattgaaactcaactttcg
aaagcaaaaatcaaagaatttcagctggtttccaacatgaatttttccgccatcggcaaa
aaagtatctttgtttgatctggcaccgaaagatttagttgtggtgacgaaaaatgctttt
gctgggctgaattttattaaaaatttctacgaaaaagcggaagaacggttcggaacatta
agcacggaaattaaacatcagactccggaagaactttttatctcggaagaggatttttcg
aaagacattaataaatttgagtggattgattttactttacaggaagtgaaaaacagcgat
gctgccgtcatccaattgaaccaaacgccgcagccgagctttcataagaagtttgacatg
ctgcaggaagatctggaagaaaaacaaaatgaaggttttgaaacctggatttctttttcc
accgaaaaacagaaagaaagactggaagccatttttgaagaactggaaaaaaatgtgcct
tttaagtcctttaaatctgaactgcatgaaggttttgtagattttgaacacaaaatttcg
gtctacaccgatcaccagattttcgaccgttaccaacgatataaagccaaaaatacgttt
gcgaaatcggagcagattacgctgaaagatttaatgcagatgaaagtgggcgattatatc
gcacacatcgatcatggaatcgggaaatttatgggtttggtgaaagtaaataacaacggc
aaaattcaggaatgttttaaactggtctataaaaatggcgatttgctgtatgtgagcatt
cattctttaaataaaatttcaaaatacaatggccccgacggtcgtgaaatcgttctttca
aagctcggttcgccagcctggaaatcattaaaacaaaaaacaaaagccaaagtaaagcag
attgcttttgatttaatcagactttacgccgaaagaaaaaccgcgaaaggatttgctttt
aaacctgattcttacctgcaaaatgaactggaagccagttttatttatgaagatacgcca
gatcaggaaaaagcgacgatcgatgtgaaaactgatatggaaaatgaaaccgtgatggac
cgcctgatttgtggcgacgtaggtttcgggaaaacggaaatcgcgatccgcgctgctttt
aaagctgccacagacggaaaacaggtggcgattttggtgccgaccacgattctggctttt
cagcattatcgtagttttatggaaaggctaaaagattttccggtgacgatttcttatatg
aatcgtttccgcagcgcgaaacagaaagcagaaactttggaaggcttgaaatccggaaaa
attgatattgtcatcggaactcatcaacttgtgggaaattcggtcaaatttaaagatttg
gggcttttaattatcgatgaagaacacaaattcggtgtttcggtaaaagacaaactgaaa
acgattaaaagcaatgtggatactttaacacttacggcgacgccgattccgcgtacttta
caattttctttaatggccgcgcgcgatctttcggtcattaaaacgccgccgccaaaccgc
cagccggtggaaacacaaattgttggttttaatgaagaaattatccgcgatgcgatttct
tatgagcttcagcgcgatggtcaggtgtatttcattaataacagaattgaaaatctgaaa
gatattgcaggtttaattcagcgccttgttcctgatgcaaaggtgattacaggtcacggg
cagatggacggcaaacagctggaacgcaatgttctggattttatggaaggtaaatatgac
gtgcttgtttccaccaccattatcgaaagtggtgtggatgtgccgaatgcgaacacgatt
ttcattaatgatgcgcagcggtttggtatggcagatattcaccagatgcgcggccgtgtt
ggaaggagcaaccggaaagcattttgttttttgattacaccgccgtttgatatggtgact
tctgatgcacgaaaaagattggaggcgattgaacagttttcggatttgggaagcggtttt
cagattgcgatgaaagatttggaaattcgtggcgccggcgatttattgggtggtgaacag
agcggttttatcaatgaaatgggttttgacacgtaccagaaaattatgcaggaagcgctg
gaggaacttcaaaatgatgaggaattcgaagatttatttgataatgaggaagaccgaaaa
aagcttttcaaatcgaataaagaggtgaacattgataccgacttggaattaatgctgccg
gattcgtatgttcaaagcattgaagaaaggttgtcactttaccagaaattagcggaaatt
gaaagtaaggaagagctgaaaaaaatggaaagtgagctgatcgacagatttggaaaattg
ccgcctgaagcagtcaatttattgaaatcggtggagctgaaatggattgcttcggaaatt
gggttcgataaaatagtggtaaaaaacggcgtttttctgggatattttccgcaaaatccg
caggacaaattctatcaaagcgaaaaattccggaagattattgcctatttaacggcatat
ccgagcgaagctactttgaaagaaaaaagcagtaaagaaggaaatcagctcatgatgcga
aaagaaaatgtgcaaaatgtggacgaggtgaatgcggttttggaaagaattttagcaaaa
taa
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