Kaistella daneshvariae: EIB71_09100
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Entry
EIB71_09100 CDS
T06920
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kda
Kaistella daneshvariae
Pathway
kda03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EIB71_09100 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kda03400
]
EIB71_09100 (ligD)
Enzymes [BR:
kda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EIB71_09100 (ligD)
DNA repair and recombination proteins [BR:
kda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EIB71_09100 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AZI67811
LinkDB
All DBs
Position
complement(1954648..1957299)
Genome browser
AA seq
883 aa
AA seq
DB search
MALEKYREKRDESKTPEPFGGKTSGKELVFVIQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSLDPDVKRLAMMVEDHPYDYRKFEGLIPKGQYGGGTVIVWDEGTYEPIDEVEGDKKKQE
KSLLEQLKSGKIKFRMHGEKLKGDFALIKAYGRSENGWLLMKLEDEFASTDDITKKDKSV
ISKKSIAEMEKSPDRIYGEEKAAKAEDEAKDKKMPKKSRKKPADVAALLESAPKEKFYQE
VEPMLATLVDEPFDSEDWLYEVKWDGYRAVAFLNEGSVEMKSRNDKSFNEKFYPVFDELK
KLKINAVLDGEIVVLNSEGKADFGGLQNWRSESDGDLVFYIFDILWLDGKDLKDFVFTDR
RKILSSVLPENKTILLSEAFDTSGIEFLETARKMGLEGIMAKRKDGRYHTKNRTKDWLKI
KANKRQEVVIGGFTVNEGTSKKFSSLLLGVYEGKKLIYTGKVGTGFNAKMQTEMMELFKP
LITDKVPFSEEPDVNKPSRFRPDPPHATVTWLKPELLCEVSYAEITSDGIMRHPSFKGMR
SDKDAKKAVLEVEKHTEDIVKELETPIKKRGKAARKTLLNPKDKSQVKKINGHELKFSNL
DKIFWPKEKITKRDLINYYYQVAPYILPYLKERPQSMNRFPDGIEGEQFYYKDVTGRAPD
WVETYLYHSEKDHRDRKYLVGKDEATLLYMANLGCIEMNPWNSTIKKPDNPTFCIIDLDP
DQNSFDQVVETALLTRDILADMGVPCYCKTSGSTGLHIYIPLGNKYTYEQSKEFARAIVT
LVNRELPEITSIERIIKEREGKMYLDFLQNRPHATIACVYSVRPKPGATVSMPLHWDEVK
KGLKISDFTIFNALERLEQEGDIFKPVLGKGIDLLKVLERFEG
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggctttagaaaaataccgtgaaaaacgcgacgaaagtaaaacaccggagccttttggc
ggaaaaacttcagggaaagaactggtttttgtcattcaaaagcatgatgcttcgcacctg
cactacgatttccgtctggaaatggatggcgtgctaaaaagctgggccgtacccaaaggt
ccatcgctggatcccgacgtaaaacggcttgccatgatggtggaagatcacccttacgat
tatcggaaatttgaaggcctcatcccaaaagggcaatacggcggcggcacggtgatcgtg
tgggacgaaggcacatatgaacccatcgatgaagttgagggcgataagaagaaacaggaa
aaaagcctgctggagcagctaaaatccggcaagattaaattccgcatgcatggtgaaaaa
ctgaaaggcgattttgctttaataaaagcctacggccgtagtgaaaacggttggttgctg
atgaagctcgaggatgaatttgcttctacggacgacatcaccaaaaaagataaatcggtg
atttctaaaaaaagcattgccgaaatggaaaaatccccggaccgaatttacggtgaagaa
aaagcagcaaaagcagaagacgaggcaaaagacaaaaaaatgccgaaaaagagccgaaaa
aaaccggctgacgtggcggcgcttttggaatcggcaccgaaagaaaaattttatcaggaa
gtggaacctatgcttgcgactttggttgatgagccgttcgacagtgaagactggttgtac
gaagtgaaatgggacggttaccgcgcggtggcttttctaaatgaaggaagtgtagagatg
aaatcgcgcaatgataaaagctttaatgaaaagttttatccggtatttgatgaattgaaa
aaattgaaaattaatgccgttttagacggagaaattgtagtcttaaattctgaaggaaaa
gccgatttcggtggtctgcaaaactggcgcagtgagtccgacggcgatttggttttctat
atttttgacattttgtggcttgatggtaaagacctgaaagattttgttttcaccgaccga
agaaaaatattgtcttccgtcctacctgaaaataaaaccattctgcttagcgaagctttc
gatacctccggaattgaatttttggaaactgcaagaaaaatgggtctggaaggtattatg
gcgaaacggaaagacggccgctatcacaccaaaaaccgcacaaaagactggctaaaaatc
aaagcaaataaaagacaggaagtggtcatcggtggtttcacggtgaatgagggaacgagc
aaaaaattcagcagtttgcttttgggtgtttacgagggaaaaaaactcatctacaccgga
aaagttggaacgggttttaatgcgaaaatgcagaccgagatgatggagctttttaaaccg
ctgattaccgacaaagttcctttcagtgaagaaccggacgtcaataaaccttcgcgtttc
cgccccgatccgccacacgccacggtgacctggctgaaaccggaactgctgtgtgaagtc
agttacgctgaaattacttcagatggaattatgcggcatccctccttcaaaggcatgcgt
agcgataaagacgcaaaaaaagctgtgctggaagtagaaaaacataccgaagatattgta
aaagagctggaaacaccaatcaaaaagcgcggaaaagcagcgagaaaaacattattaaat
ccgaaggacaaaagccaggtgaaaaaaattaacggtcatgagctgaaattcagcaatctg
gacaaaattttctggccgaaagaaaaaatcactaagcgcgacctcatcaattattattac
caggtagcgccttatattttgccttatttaaaggaaagaccacaaagtatgaaccgcttt
ccggatggtattgaaggggaacagttttactacaaggatgttacggggcgcgcgccagat
tgggtggaaacttacctctaccacagcgaaaaagaccaccgcgaccgcaagtatttggtt
ggaaaagatgaagcgacgctgctctatatggcaaacttgggctgtattgagatgaatccg
tggaacagcaccattaaaaaacccgacaacccgactttttgcatcatcgatctggacccg
gatcagaattctttcgaccaggtggtggaaaccgctttgttgacgcgcgacattttagcc
gatatgggtgtgccctgctactgcaaaaccagcggctccacgggtttgcatatttacatt
ccgttgggaaataaatacacctatgagcaaagcaaagagttcgcgcgcgccatcgtcacg
cttgtaaaccgcgaattgccggaaattacgagcatcgaacgcattattaaagagcgcgaa
ggcaaaatgtatctggactttctgcaaaaccgaccgcacgcaaccatcgcctgcgtgtat
tccgttcgaccaaaacccggtgccacagtttcaatgccgctgcattgggatgaagtaaaa
aaaggcctcaaaatttctgatttcaccatttttaatgcactggaaaggttggagcaggaa
ggtgatattttcaaaccggtgcttgggaaaggaattgatttgctgaaggtattggagagg
tttgaaggatga
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