Candidatus Kirkpatrickella diaphorinae: N5W20_02535
Help
Entry
N5W20_02535 CDS
T09554
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kdp
Candidatus Kirkpatrickella diaphorinae
Pathway
kdp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N5W20_02535 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kdp03400
]
N5W20_02535 (mfd)
Enzymes [BR:
kdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N5W20_02535 (mfd)
DNA repair and recombination proteins [BR:
kdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N5W20_02535 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UYH51763
LinkDB
All DBs
Position
564328..567786
Genome browser
AA seq
1152 aa
AA seq
DB search
MGQTVDYPTLWGVPDSYTAFFLRTRLSEHEGTLVHIARDDAAIAVIGDMLNYLEPTLEIL
RFPAWDCLPYDRVSPHPVIIAERADTLSRLLDAPKGRRVVLTTVAALVQRVTPRDVFQGQ
TMRISVGESCDPETLIALLIASGYSRTDTVREPGEFASRGGIFDLFPPSEAAPLRIDLFG
DEVENIRRFDVQSQISTTPVRIFELRPVTEYMLTPETVSRFRTGWRDAFGPSSARDTLYE
HISEMRRHPGIEHYLPLFYPELENIFDYIPDAAVSADYQFEEILLNRLEMIKDHYAARRE
LAHEGEALYRALPPHRLYLDRAGWDAMLSRQKCIKISPFAKPDVGVGLDAGARAGLVFTR
GKDQTREGVFQDLKRQVKDWAAQGRRVYITAWSTGSRARIAALLGDHGLAYENFDPWADA
AGVATGIVGLIILGLERGFIADRVVFITEQDLLGGRIARPPRRKRKADQFISEAAEINEG
DLVVHADYGIGRYEGLETISVGVAPHDCLRLLYDNDQKLYLPVENIELLSRFGSEQNGVA
LDRLGGPAWQARKAKMKERIRDMAAELIRTAAGRSIREAPNLAPPEGLWNEFCAGFPFIE
TDDQTRAISDVLEDLTSGKPMDRLICGDVGFGKTEVAIRAAFIAAMSGVQVAVVVPTTLL
ARQHYRSFTSRFSGFPIQIAQLSRLVSAAEAARVREGLAAGRVDIVIGTHALLAKTIKFA
NLGLLIIDEEQHFGVAHKERLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIATPPT
DRLAVRTFITPFDSVMIREAIQRERFRGGQIFCVVPRVEDMERMSERLREIVPDAKIVQA
HGRLAATELERVMTEFSDGKHDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQLRG
RVGRGKQRGYAYLTWPQTHPLSPAAEKRLEIMQSLDSLGAGFTLAAHDLDLRGAGNLLGE
EQSGHIKEVGIELYQQMLEDAVGDLRHTGAAARARDEDWTPIIVLGLPVLIPEDYVKDLP
VRLGLYRRIGVLKGEAEVDAMRAEMIDRFGAIPPEVENLLSVIEIKKACRRAHVERVEVG
PKGMVIQFRKQQFPNPDGLMKWIARNAAQGVKLRADHKLAIVREMTNAQRIAYARKVTAV
LARMAEKKTGAP
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
gtggggcagacagttgattatccgaccctttggggcgtgccggactcttataccgcgttt
ttccttcgcacgcggttgagtgagcatgaggggacgctcgtgcacattgcccgggatgac
gcggcgatcgcggtcattggcgatatgctcaattaccttgaacccactttggaaatattg
cgcttccccgcctgggactgcctgccttatgaccgcgtttcaccccacccggtgattatt
gccgagcgcgccgatacattgtcccgccttctggacgcgccgaaggggcgacgcgtggtg
ctgacgacggtggccgctctggtgcagcgcgtcaccccgcgtgatgtgtttcaagggcag
acaatgcggatttccgtcggggaatcctgtgatccggaaacattgatcgccctcctcatc
gcgagtggctatagccgcaccgacacagtcagggagccgggtgagttcgccagtcgggga
gggatatttgaccttttccccccttccgaagccgcgcccctgcgtattgatctcttcggc
gatgaagttgaaaatatccggcgtttcgacgtccagtcccagatctcaacgacgccggtc
aggatttttgaattacggccggtgacggaatatatgctgacgccggagacagtcagtcgc
ttccgcaccgggtggcgggatgcttttggcccttcctcagcgcgtgacacgctttatgag
catatttctgaaatgcgccgccatccgggtatcgagcactacctgccgctcttctacccg
gaacttgagaacatctttgattatatcccggacgcggctgtcagcgccgattatcagttt
gaggaaatcctgctgaaccggctggagatgatcaaggaccattacgcggcgcggcgggag
cttgcccatgagggcgaagcgctctatcgcgctttgccaccccaccggctttatcttgat
cgcgccggttgggacgccatgttgagccgacagaaatgcatcaagatcagcccgtttgcg
aaaccggatgtcggggtcgggctggatgccggtgcgcgggcgggcctcgtcttcacccgt
gggaaggaccagacgcgggaaggcgtctttcaggatctgaagcgtcaggtcaaggattgg
gcggcgcaggggcggcgtgtttacatcacggcatggtcaaccggctcccgcgcgcgaatt
gcggcgctgcttggtgaccatggccttgcttacgagaattttgacccatgggccgatgcg
gcgggtgtcgcgacaggcatcgtcgggttgatcatcctggggcttgagcgcggctttatt
gcggaccgcgtggtgtttatcaccgagcaggatctgctgggcggacgcatcgcgcgccca
ccgcgtcgcaagcgcaaagccgatcagtttatttcagaagccgcggagatcaatgaaggg
gacctggtcgtccatgcggattacggcatcgggcgttatgaggggctggaaaccatcagt
gtcggggtcgcgccgcatgattgcctgcgtctgctctatgataatgatcagaagctctac
ctcccggttgaaaatatcgaattactgagccgcttcgggtcggagcagaatggcgttgcg
cttgaccgcctcggcggcccagcctggcaggcgcgcaaagcgaagatgaaggagcgcatc
cgcgacatggcggcggagctgatccgcacggcggccgggcgatccatccgggaagcaccc
aatctggccccgccggaagggctctggaatgaattttgcgccggttttccgtttatcgaa
acggatgaccagacgcgggcgatcagtgatgtgctggaggatctcacgtcaggcaagccg
atggaccgcctcatttgcggcgatgtcggtttcggcaaaacggaggtcgcgatccgtgcg
gcgtttatcgcggccatgtccggggtgcaggtggcggttgtcgtgccgacaaccttgctg
gcgcgacaacattatcgcagcttcacgtcgcgattttccggctttcccattcagattgcc
caattatcccgcctggtgagtgcggcagaagccgcgcgtgtgcgggaggggcttgcggcg
ggccgggtggatattgtgatcggcacccacgcgcttctggcaaaaacgatcaaattcgcc
aatctcggcctgctgattattgatgaggaacagcatttcggcgtcgcgcataaggagcgc
ctcaaagccctgcgggaggatgtccatgtgctgacattatccgccacgcctctcccccgc
acattgcagcttgctctgacgggcgtgcgggagatgagcctgattgcgacacccccgaca
gaccgcctggccgtgcgcaccttcatcacaccgttcgatagtgtgatgatccgtgaggcg
atacagcgtgagcgattccgtggggggcagattttctgcgtcgtgccgcgcgtcgaagat
atggagcgcatgtctgaaagattgcgggagatcgtcccggatgccaaaatcgtgcaggct
catggccgcctcgccgcgaccgaacttgagcgcgtgatgacggaattttcagacgggaaa
cacgatatcctgctttcaaccaacattgtcgaaagcggcctcgatatgcctgccgtgaat
acgctgatcatccatcgtgccgacatgttcgggctgggtcagctttaccagttgcgcggg
cgtgtggggcgcggtaagcaaaggggttatgcttatctgacctggccgcaaacgcaccct
ctcagcccggcggcggaaaaacggcttgagatcatgcagtcactcgacagtctgggggct
ggcttcacgctggccgcgcatgaccttgacctgcgcggtgctggtaatttgctgggtgag
gagcaatccggccatatcaaagaagtgggtatcgagctttaccagcaaatgttggaggac
gcggtgggcgacctgcgtcacacaggcgcggcggcacgcgcgcgggatgaggattggacg
cccatcatcgtgctcggcctacccgttctgatcccggaagattacgtcaaagacctgcct
gtgcgtctgggcctttaccgccgtatcggcgtgctgaaaggtgaggcggaagtcgacgcc
atgcgcgcagagatgattgaccgttttggcgcgatccccccggaggttgaaaatctcctg
agcgtgatcgaaatcaaaaaagcctgccgtcgcgcgcacgtagagcgggttgaagtcggg
ccgaaaggcatggtcattcaattccgcaagcagcaattcccgaacccggacgggttgatg
aaatggatcgcgcgtaacgcggcacaaggcgtcaaactcagggcggatcataagctggcc
attgtgcgggagatgacaaacgcccagcgtatcgcctatgcgcgcaaagtcaccgccgtc
cttgcccgcatggcggagaagaaaacgggggcgccctaa
DBGET
integrated database retrieval system
