Kroppenstedtia eburnea: GXN75_08835
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Entry
GXN75_08835 CDS
T06618
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
keb
Kroppenstedtia eburnea
Pathway
keb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
keb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GXN75_08835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
keb03400
]
GXN75_08835
Enzymes [BR:
keb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GXN75_08835
DNA repair and recombination proteins [BR:
keb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GXN75_08835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QKI82099
LinkDB
All DBs
Position
1801478..1802380
Genome browser
AA seq
300 aa
AA seq
DB search
MRRVTMNRIVQVEGKEIQISNPDKKLFPGISKWDWILHLSRLAPRILSYARGRYLTTIRY
PDGVEGKSFYQKNVPDHAPRWIQTARSGEVNHILLQDAPTLIWLGNLACLEFHVSFDRAD
RPGYPTELVFDLDPSVEGFEAVMETALLTREVLNSLGLDGVVKTSGATGLQLYVPIQPKY
PFAETRIISQFVASYLQEKNPRLITIERQVKKRGSRVYFDYLQHWKGKSLITVYSPRARR
EATLSVPLRWEELKPGLTPERFTLETVHRRLEEEGDLFAPITRPAGPHDLSEILTFISRH
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgaggagagtgacaatgaaccggattgtgcaagtcgaaggaaaggagatccaaatctcc
aacccggacaaaaagttgtttcccggaatcagcaaatgggactggattttgcacttgagc
cgtttggcgccccggatcctctcctatgcccggggaaggtatttgacgacgatccgttat
ccggacggtgtggagggaaaatccttttatcaaaaaaatgttccggatcatgcgccccga
tggattcagaccgcccgctccggggaggtgaatcatatcctgctgcaggatgccccgacc
ctgatctggctgggaaacctggcctgtctggaatttcatgtctccttcgatcgggcggac
cgaccgggttatccaacagagctggtctttgatctggatccgtcggtggagggctttgaa
gcggtgatggagacggcacttctcacccgggaggtgctgaactccctgggtctggacgga
gtggtcaaaacatcgggcgcgacgggacttcagctgtatgtcccgatccagcccaagtat
ccctttgcagagacccgcatcatcagccaatttgtggcaagttatctgcaggaaaagaat
ccgcgcctgatcacgatcgagcgtcaggtgaagaaacgggggagtcgggtctactttgat
tacttgcaacattggaaggggaagtccctgatcaccgtatattctccgcgtgcccggcgg
gaggccaccctatccgttccccttcggtgggaagagttgaaaccgggattgacaccggag
cggtttacattggagacagtccaccgtcgtctggaggaggagggagatctttttgcaccg
atcacccgccccgccggaccccatgacctgtcagaaatcctgacctttatctcccgccat
tag
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