Komagataeibacter europaeus: S101446_00934
Help
Entry
S101446_00934 CDS
T04893
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
keu
Komagataeibacter europaeus
Pathway
keu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
keu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
S101446_00934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
keu03400
]
S101446_00934
Enzymes [BR:
keu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
S101446_00934
DNA repair and recombination proteins [BR:
keu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
S101446_00934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
RecG_dom3_C
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARW16073
LinkDB
All DBs
Position
1038654..1042136
Genome browser
AA seq
1160 aa
AA seq
DB search
MNDTAGFSLAPGAPLPVWGVPDGYDAFLLARRAGEHDGPVLHVCRDDASMARIADLLAFV
TPKAEILRFPGWDCLPYDRVSPNPAIVAERVATLTRLLEKATTPRIVLTTVMGIVQRVPP
RAAFAGQSITIRAGESLDAPFLMELLIAHGYNRTDTVMDQGEFATRGGIFDIFPAGDSEP
VRLDLFGDEVENIRRFDPGTQRSTAKIDSLTMRPVADFSLDPTSISRFRTGWRDLFGPAA
ASDPLYQHISDGRRHAGMEHWLPLFHEQMETLVDYLPGVSISLANQAEEVLVTRLEMIAD
HYDARRQPTREGEVPYRPLPPHLMYLDRKGWDAMIAGRKAVVFMPFAQPDGAPGMDAGGR
PGQMFAKTVTEGRENVFPMLHAKVEEWSQTGRRAYVTAWSRGSCERIGVLLREYRLPVQT
CATWKEAQKLKPGTVGLLTLGLDRGFVADNVAFVSEQDLLGERISRPPRRRKKADQFISE
ASEIAEGDLIVHQDYGIGRYDGLETIGVGTAPHDCLRLIYDGNEKLFLPVENIELLSRFG
SDQAHVALDKLGGVSWQSRKAKMKQRIRDMAGELIRTAAARALREAPAITPEDGMWDEFC
ARFPFVETEDQSRAIADVLDDMASGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGAQVAV
VVPTTLLARQHYRTFSARFAGLPVNVAQLSRMVTGKEATAVRKGLADGTVNIVIGTHALL
AKTVRFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMS
LIATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQVFCVVPRIEDLDRMAARLHEIVP
DARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG
QLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRG
AGNLLGDEQSGHIREVGIELYQQMLEDAVADLRTEKGRRKLQDRDWTPNIILGLPVLIPD
TYVTDLPVRLGLYRRIAALANDAEVEAMEAELVDRFGTLPDEVRNLLDVVTLKRMCREAG
VERLEAGPKGMVIQFRGNTFANPAGLVAWIAKQKEANVRLRPDHKLAIIREMTNAQRITQ
ARKVLTALVRLAREETGVPA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatacggcaggtttctcactcgcacccggcgcgccgcttcctgtatggggcgtg
ccggatgggtatgacgctttcctgctggcacgcagggcgggcgaacatgacgggcctgtc
ctgcatgtctgccgcgacgatgcctccatggcgcgcatcgcggacctgttggcctttgtc
acgcccaaggcggaaatcctgcgtttcccgggctgggactgcctgccgtatgaccgcgtt
tcccccaatcccgccatcgtggcggaacgggtcgcgacactgacccgcctgctggaaaag
gccacgacaccccgcatcgtgctgaccaccgtgatggggatcgtgcagcgcgtgccgcca
cgcgcggcctttgccggacagtcgatcaccatcagggcgggtgaaagccttgatgcgccg
ttcctgatggaactgctgatcgcccatggctacaaccgcaccgacacggtgatggaccag
ggcgagttcgcgacccgcggtggcattttcgatattttccccgcaggcgatagcgagccg
gtgcgcctcgacctgtttggcgacgaggtggagaacatccgccgcttcgaccccggcacc
cagcgctcgaccgcgaagatcgacagcctgaccatgcggccggtagcggatttcagcctt
gacccgaccagtatctcgcgtttccgcaccggctggcgcgatctgttcgggcctgccgcc
gccagtgacccgctgtaccagcacatatccgatggccgtcgccatgcgggcatggaacac
tggctgcccctgttccatgaacagatggaaacgctggtggactacctgcctggcgtatcc
atatcactggccaaccaggcggaggaggtgctggtcacccgcctggaaatgattgccgac
cattacgatgcccgcagacagccgacgcgcgagggcgaggtgccctaccgcccgctgccg
ccgcacctcatgtatctcgaccgcaaggggtgggatgcgatgattgcgggccggaaggcc
gtggtgttcatgccctttgcccagcctgacggcgcgccgggcatggatgcgggcggcagg
ccgggccagatgttcgccaaaaccgtgaccgagggacgtgaaaacgtctttccgatgctg
catgcgaaggtggaggaatggtcccagaccggcaggcgcgcctatgtcacggcatggagc
cggggatcgtgcgaacgcattggcgtgctgctacgtgaataccgcctgccggtacagacc
tgcgccacgtggaaggaggcgcagaaactgaagcccggcaccgtcggcctgctgacgctg
gggctggatcgtggcttcgtggccgacaacgtggccttcgtgtccgaacaggacctgctg
ggcgaacggatttcccgcccgccacgccgccgcaagaaggcggaccagttcatatccgaa
gcatcggaaattgccgaaggcgacctgatcgttcatcaggattacggcattggccgctat
gacgggctggaaacgattggcgtgggcacggcgccacatgactgcctgcgcctgatctat
gacggcaatgaaaagctgttcctgccggtggaaaacatcgaactgctcagccgcttcggt
tcggatcaggcccatgtggcgctggacaagctgggtggcgtgtcatggcagtcgcgcaag
gcgaagatgaagcagcgcatccgcgacatggcgggtgaactgattcgcacggccgccgcg
cgtgccctgcgcgaagccccggccattacgccggaagacgggatgtgggacgaattctgc
gcccgcttcccctttgtcgagaccgaggaccagtcccgcgccattgccgacgtgctggac
gacatggcgtcgggcaagccgatggaccgtctggtctgtggcgacgtgggctttggcaag
acggaggtcgcactacgtgccgcctttgttgccgccatgtccggcgcgcaggtggccgtg
gtggtgccgaccacgctgctggcgcgccagcattaccgcacgttttccgcccgctttgcc
gggctgccggtcaatgtggcgcagctttcgcgcatggtgacaggcaaggaagccaccgcc
gtgcgcaaggggctggccgatggcacggtcaatatcgtgatcggcacgcatgcgctgctg
gccaagacggtcaggtttgctgatcttggcctgctgatcgtcgatgaggaacagcatttt
ggcgtggcccacaaggaaaagctcaaggcgctgcgtgaggacgtgcatgtgctcaccctt
tccgccaccccgctgccgcgcacgctgcaactggcgctgaccggcgtgcgggaaatgagc
ctgatcgccaccccgcccaccgaccggctggcggtacgcaccttcatcatgccgttcgac
agcgtggtgatccgcgaggcgatccagcgcgaacgcttccgtggcgggcaggtgttctgt
gtcgtaccacgtatcgaggacctggaccgcatggccgcgcgcctgcacgaaatcgtgccg
gacgcccggctggtacaggcccatggccggctgacgccaaccgagctggaacgggtcatg
accgagttcagtgatggcaaatatgacatcctgctatccaccaacattgtggaaagcggc
ctggacatgcctgcggtcaatacgctgatcatccatcgtgccgacatgttcgggctgggt
cagctgtaccagctgcgggggcgcgtggggcgcggcaagcagcgtggctatgcctacctg
acgtggccgcagacgcatgtgctgtcggcggcggcgcagaagcggctggaagtcatgcag
acgctggatacgctgggcgcgggcttcacgctggcgtcccacgatcttgacctccgcggg
gctggcaacctgctgggcgacgagcagtcgggccatatccgtgaagtgggcatagaactg
taccagcagatgctggaagacgcggtggccgacctgcgcacggaaaagggacggcgcaag
ctgcaggaccgcgactggacgcccaacatcatccttggcctgccggtgctgatccctgac
acctatgtcaccgacctgccggtgcgtctgggcctgtaccgccgtatcgcggcactggcc
aatgatgcagaggtcgaggcaatggaagccgaactggtggaccgcttcggcacgctacct
gacgaagtgcgcaacctgctggatgtcgtcacgctgaaacgcatgtgccgcgaggccggg
gtggagcggctggaagctgggccaaagggcatggtcatccagttccgtggcaacacattc
gccaaccccgcggggctggtggcgtggattgcgaagcagaaggaagccaatgtccgcctg
cgtcccgaccacaagcttgcgatcatacgcgaaatgaccaacgcccagcggatcacgcag
gcgcgcaaggtcctgacggcactggtcaggctggcacgggaggagacaggcgttccggcc
tga
DBGET
integrated database retrieval system
