Kaistella flava (ex Peng et al. 2021): Q73A0000_03135
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Entry
Q73A0000_03135 CDS
T08317
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kfa
Kaistella flava (ex Peng et al. 2021)
Pathway
kfa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Q73A0000_03135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kfa03400
]
Q73A0000_03135 (ligD)
Enzymes [BR:
kfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Q73A0000_03135 (ligD)
DNA repair and recombination proteins [BR:
kfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Q73A0000_03135 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QOW09425
UniProt:
A0A7M2Y731
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All DBs
Position
692117..694669
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AA seq
850 aa
AA seq
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MPLEEYNKKRKFDETSEPEGKENKNEGKLIFVIQRHSATRLHYDFRLEMDGVLKSWAVPK
GPSLNPQDKRLAMMTEDHPYSYKDFEGAIPEGNYGGGEVEIWDSGTYEPLEKVEGKSDDL
VMRHELHQESLKFVLHGKKLKGEFALVKIKNSKEGNAWLLIKHKDKFALAEYDSEEHVPK
KSKVTLREENRPSKKKVKTPEKEQKTFRNFTPSLIGEKKLKDFIKPMLAQPGEKAFDHKD
WVFEIKWDGYRAVADLRETAIQLYSRNGLSYSDKFSKIVKALDHQNYQMVLDGEIVAYNK
DGKPDFQTLQKIGENPDLAMTYQVFDLLWLNGHSTENLSLFQRKELLKDALIENEVIKYC
EHIPEKGIDFFDQIKKMELEGMIAKKSDSTYSEGVRSSDWLKIKFQNTEDVLICGFTEPN
GGRKNFGAIILGTYIDGQLEYCGHAGTGFSDKTLDSLHDLFKPLITKDCPFKAIPKTNAP
ATWMKPELVCEIKYTEKTKDGIFRHPVFMGLRSDKDKEDLIDENTPDSKDVPPLKVIKKE
ELKITDVKKSKSKTTIKSVKLTNQNKIYFPESGITKGEVVEYYQSVAKYILPHLKNRPQS
LNRFPNGIEGLSFYHKDAGNDAPAWIDKVSVFSESNEKNIEYLICNTADDLAYLNNLGCI
DLNPWNSTVEDLNKPTWLALDLDPSDKNTFDQVIETALCVKEILDLAKIKGFCKTSGSSG
IHIFIPMEAKYEVEQVKNFAHVLMQKVQQKLPDLTTLERNLKKRGEDKIYLDYLQNRTGQ
TLASVYSIRPKPFAPVSMPLIWEELKFGLKPTDFNIHNALERIKKNGDLFKPVLGKGIDM
LKALENLSKI
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccacttgaagaatataataaaaagcggaaatttgacgaaacctctgaaccagaagga
aaggagaataaaaacgagggcaaattgatttttgtcattcaacggcattctgcaacaaga
ttgcattatgattttcgtttggaaatggatggtgttcttaaaagttgggccgttccgaaa
ggtccttcactaaatccacaagataaaagattggcaatgatgacagaagatcatccatat
tcttacaaggattttgaaggagctattcctgaaggaaattatggtggcggcgaagttgaa
atttgggattcgggaacttatgaacctttagaaaaagtcgaaggtaaatctgatgattta
gtaatgcgccacgaactgcatcaagaatcgttgaaattcgttcttcacggcaaaaaatta
aaaggggaatttgctttggtgaaaattaaaaactcgaaggaaggaaatgcttggctgctg
attaaacacaaagataaattcgcacttgcagaatacgattctgaagaacatgtcccgaaa
aaatcaaaagtgactttacgagaagaaaaccgacccagtaaaaaaaaagtaaagactcct
gagaaagagcagaaaacatttagaaactttactccttcactaattggtgaaaaaaagtta
aaagattttattaaaccaatgttggctcagccgggagaaaaagcttttgatcataaagac
tgggttttcgaaattaaatgggatggttatcgtgctgttgcagatttgagagaaactgcg
attcagctttattcccgaaatggtctctcctattctgataaattttcaaaaattgttaaa
gctttagatcatcaaaattaccagatggttttagatggcgaaattgtagcctataataag
gacggaaaacctgattttcaaaccttgcaaaaaattggtgaaaatccagatttggcgatg
acttatcaagtctttgatttgctctggctcaatggacattctacagaaaacttaagtcta
tttcaacggaaagaattactgaaagatgctttgatcgaaaatgaggttattaaatattgc
gaacatattccagaaaaaggaattgatttttttgatcagataaaaaaaatggagttggaa
ggaatgattgcaaaaaaatccgacagtacttattcagaaggagttcgctcttcggactgg
ttgaaaattaaatttcaaaatacagaagatgttttaatttgtggttttacagaaccaaat
ggtggacgaaaaaactttggcgccattattttaggaacttatatcgatggtcaattagaa
tattgcggtcatgccggaactggtttttcagataagactttagattctttgcatgatttg
tttaaacctttaattactaaagattgcccttttaaagcaattcctaaaaccaatgctcct
gcaacttggatgaaacctgaattagtttgtgaaataaaatataccgaaaaaacgaaagat
ggaatttttcgtcatcccgtttttatgggacttcgaagtgataaagacaaagaagattta
attgacgaaaacacacctgactctaaagatgtaccacctttaaaagtaattaaaaaagag
gaattgaaaataactgatgtcaaaaaaagcaaaagtaaaacgacgataaaatcggttaag
ctgacgaatcaaaataaaatttattttccggaaagtggaattacaaaaggtgaagtggtc
gagtattatcaatctgtggcaaagtatattttacctcatttgaaaaaccgtccacaatcg
ttaaaccgttttccaaatgggattgaaggattaagtttttatcataaagatgctggaaat
gacgctcccgcttggattgacaaagtctctgtgttttcagaatcaaatgaaaaaaatatt
gaatatttaatttgcaataccgctgatgatttggcgtatttgaataatttaggttgcatt
gatttgaatccctggaattcgacagtcgaagatttgaataaaccaacgtggcttgccctg
gatttagatccgtcagacaaaaatacttttgaccaggtgatcgaaactgctttatgcgtg
aaggaaattttagatctggcaaaaattaaaggcttttgtaaaacttcgggaagctcagga
attcatatttttattccaatggaagctaagtatgaggtggaacaagtaaaaaatttcgca
catgttttaatgcagaaagtgcaacaaaaattgcctgatttaacgacgctggaaagaaat
ttaaaaaaacggggtgaggataaaatctatttagattatctgcaaaatcgaactggtcag
actttagcgagcgtttacagtattcgacctaaacctttcgcgcctgtttcaatgccttta
atctgggaagaattgaagtttggtttaaagcctacggacttcaatattcataatgctttg
gagcgtatcaaaaagaacggcgatctgtttaaaccagttttaggtaaaggaattgatatg
ttgaaagcattagagaacctttctaagatttaa
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