Kribbella flavida: Kfla_5701
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Entry
Kfla_5701 CDS
T01155
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kfl
Kribbella flavida
Pathway
kfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Kfla_5701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kfl03400
]
Kfla_5701
Enzymes [BR:
kfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Kfla_5701
DNA repair and recombination proteins [BR:
kfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Kfla_5701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AroM
UB2H
Glyco_tran_WecG
AAA_22
RecG_dom3_C
CbiX
Motif
Other DBs
NCBI-ProteinID:
ADB34706
UniProt:
D2PPB0
LinkDB
All DBs
Position
complement(6130746..6134384)
Genome browser
AA seq
1212 aa
AA seq
DB search
MTLAGLVDTLVTDPVVAEAVRDARSDFAAGGVATLDLSAPGPIRPVLLAALASERLGADR
PVLAVTATFREAEELTEALQCLVEPATVAYYPAWETLPHERLSPRSDTVGRRLAVLRRLA
HPDPSDETTGPIKILVAPVRSVLQPQVAGLADLRPVQLHVGDSVELEDVVTRLAAAAYNR
VDLVERRGEFAVRGGIIDVFPPTEEHPLRVDFFGDDVEEIRYFAVADQRSLEIAQHGLWA
PPCRELLLTDEVRARAAVLAKEHPELAELFEKLAEGHAVEGMESLAPVLVDEMELLVDLM
PAGTHVVVSDPERVRARAHDLVATSQEFLEASWAAAAGGGDAPIDLGAAAYISLADVRTH
ALDRGLAWWSLSPFAAAPTDVPQLRDAMGERVSFDIDPDAGAVRSRKVAAHEVDPYRGET
AAAVEDVRGWLRDGWRVVCVTEGHGPAQRLAEVFSEAELPARTVDSIDGVPEPGVVLISQ
GALEQGFIAEGIKFAVLTENDLAGQRSAAERRSQQRMPSRRKKTIDPLELGPGDFVVHEQ
HGVGRYVEMMQRTVGTGQQKATREYVVIEFAPSKRGQPGDRLYVPTDQLDQVTRYVGGEQ
PTLDKMGGGDWAKRKGRARKAVRQIAGELIKLYAARQATKGHAFAKDTPWQAELEDAFPF
VETPDQLATIDDVKRDMERVTPMDRIVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT
LLVQQHYATFAERYAAFPVNVAALSRFQTDKEAKATMDGLADGSVDVVIGTHRLFSGEVQ
FKDLGLVVVDEEQRFGVEHKEQLKRLRTAVDVLTMSATPIPRTLEMSITGIREMSTIATP
PEERHPVLTFVGPYDEGQVTAAIRRELLREGQVFVVHNRVNTIEKAAARIRQLVPEARVS
VAHGQMPEHHLEQVIQEFWEKQADVIVCTTIVESGIDISNANTMIVERADLLGLSQLHQL
RGRVGRGRERAYAYFFFPPEKPLTETAHDRLATIAQHADLGAGMQVAMKDLEIRGAGNLL
GGEQSGHIADVGFDLYVRLVGEAVAEYRGDTQAEEPEVKIELPVDAHLPHDYVPSQRLRL
EMYQRLAAVRDEAGIAELVEELHDRYGDIPQPVLNLVEVAKFRNHARRAGLRDVTLQGNL
IRFGPVDLADSKVLRLNRLYPKSLVKAQLRTILVPRPATRPVAGQPLRDQELLQWCTRLI
DDVIAEPVGATA
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtgacgctggccggactggtcgacaccctggtcaccgatccggtggtggccgaggcggtg
cgcgacgcccggagcgacttcgccgcgggcggggtggcgacgctcgacctgagcgcgccc
ggcccgatccggccggtgctgctggccgcgctcgcctccgagcggctcggcgccgaccgc
ccggtgctcgcggtcaccgcgaccttccgcgaggccgaggagctgaccgaggccctgcag
tgcctggtcgagcccgccacggtcgcctactacccggcctgggagacgctgccgcacgag
cgcctgtcgccccgctccgacaccgtcggtcgccggctcgccgtcctgcggcggctggcg
cacccggacccgtcggacgagacgaccggcccgatcaagattctggtcgcgccggtgcgg
tcggtgctgcagccgcaggtcgccggactggccgacctgcgcccggtccagctgcacgtc
ggcgacagcgtcgagctggaggacgtggtcacccggctcgcggccgcggcgtacaaccgg
gtggacctggtcgagcggcgcggcgagttcgcggtccgcggcggcatcatcgacgtcttc
ccgccgaccgaggagcacccgctgcgggtcgacttcttcggcgacgacgtggaggagatc
cggtacttcgcggtcgccgaccagcggtcgctggagatcgcccagcacgggctctgggcg
ccgccgtgccgcgagctgctgctcaccgacgaggtgcgcgcgcgggccgccgtactggcc
aaggagcacccggagctggccgagctgttcgagaagctcgccgaggggcacgcggtcgag
ggcatggagtcgctcgcgcccgtcctggtcgacgagatggagctgctggtcgacctgatg
ccggccggtacccacgtcgtggtcagcgaccccgagcgggtccgggcccgggcccacgac
ctggtcgcgaccagccaggagttcctggaggcgtcctgggcggccgcggccggtggtggc
gacgcgccgatcgacctcggcgcggcggcgtacatctcgctggccgacgtccgcacccac
gcgctggaccgcggcctggcctggtggagcctctcgccgttcgcggcggcgccgacggac
gtgccgcagctgcgcgacgcgatgggggagcgggtctccttcgacatcgacccggacgcc
ggcgcggtgcgcagccgcaaggtcgcggcgcacgaggtcgatccgtaccggggcgagacc
gcggccgccgtcgaggacgtgcgcggctggttgcgcgacggctggcgggtcgtctgcgtg
accgagggccacggcccggcgcagcggctggccgaggtgttctccgaggcggagctgccg
gcccggaccgtcgactcgatcgacggtgtgcccgagcccggcgtggtgctgatctcccag
ggcgcgctggagcagggcttcattgccgagggcatcaagttcgcggtgctcaccgagaac
gacctggccggtcaacggtccgcggccgaacgccgttcgcagcaacggatgccgagccgg
cgcaagaagacgatcgacccgctggagctcggccccggcgacttcgtcgtgcacgagcag
cacggcgtcggccggtacgtcgagatgatgcagcgcaccgtcggcaccggccagcagaag
gccacccgcgagtacgtcgtgatcgagttcgcgccgagcaagcgcggccagcccggcgac
cggctgtacgtgccgaccgaccagctcgaccaggtcacccggtacgtcggcggcgagcag
cccacgctggacaagatgggcggcggcgactgggccaagcgcaagggccgcgcccgcaag
gcggtccgccagatcgccggcgaactgatcaagctgtacgccgcccggcaggcgaccaag
gggcacgccttcgccaaggacaccccgtggcaggccgagctggaggacgcgttcccgttc
gtcgagacgccggaccagctggccaccatcgacgacgtgaagcgcgacatggaacgcgtc
accccgatggaccggatcgtctgcggcgacgtcggctacggcaagaccgagatcgcggtc
cgggcggccttcaaggcggtccaggacggcaagcaggtcgccgtgctggtgccgaccacg
ctgctggtccagcagcactacgccaccttcgccgagcgctacgccgcgttcccggtgaac
gtggcggccctgtcgcggttccagaccgacaaggaggccaaggcgacgatggacggcctg
gccgacggctcggtcgacgtcgtgatcggcacccaccggctgttcagcggcgaggtccag
ttcaaggacctcggactggtggtggtcgacgaggagcagcgcttcggcgtcgagcacaag
gagcagctgaagcggctgcggaccgcggtcgacgtgctgacgatgtccgcgaccccgatc
ccgcgcacgctggagatgtcgatcaccggcatccgggagatgtccaccatcgccaccccg
ccggaggaacggcacccggtgctgaccttcgtcggcccctacgacgagggccaggtgacc
gccgcgatccggcgcgagctgctgcgcgagggccaggtcttcgtcgtgcacaaccgggtg
aacacgatcgagaaggcggccgcccggatccgccagctggtgccggaggcccgggtcagc
gtcgcgcacggccagatgcccgagcaccacctggagcaggtcatccaggagttctgggag
aagcaggccgacgtcatcgtctgtacgacgatcgtcgagtccggcatcgacatctcgaac
gcgaacacgatgatcgtcgagcgcgccgacctgctcggcctgtcccagctgcaccagctc
cgcggccgggtcggccgcggccgcgaacgcgcgtacgcgtacttcttcttcccgccggag
aagccgctgaccgagaccgcgcacgaccggctggccaccatcgcccagcacgccgacctc
ggcgccggcatgcaggtcgcgatgaaggacctggagatccgcggcgccggcaacctgctc
ggcggcgagcagtccgggcacatcgccgacgtcggtttcgacctgtacgtccggctggtc
ggcgaggcggtcgcggagtaccgcggcgacacccaggccgaggagcccgaggtcaagatc
gagctgccggtcgacgcacacctgccgcacgactacgtgccctcccagcggctgcggctg
gagatgtaccagcggctcgcggcggtccgcgacgaggccggcatcgccgagctggtcgag
gagctgcacgaccggtacggcgacatcccgcagccggtgctgaacctggtcgaggtggcg
aagttccgcaaccacgcccgccgggccggtctgcgcgacgtcaccctgcagggcaacctg
atccggttcgggccggtcgacctggccgactcgaaggtgctgcggctgaacaggctgtac
ccgaagagtctggtcaaggcgcaactgcgtacgatcctggtgccgagacctgccacccgg
ccggtcgccggtcagccgctgcgcgaccaggagctgctgcagtggtgcaccagactgatc
gacgatgtgatcgccgagcccgtgggggcgacggcctga
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