Candidatus Kinetoplastibacterium galatii: ST1E_0861
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Entry
ST1E_0861 CDS
T02466
Name
(GenBank) superfamily II helicase transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kga
Candidatus Kinetoplastibacterium galatii
Pathway
kga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ST1E_0861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kga03400
]
ST1E_0861
Enzymes [BR:
kga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ST1E_0861
DNA repair and recombination proteins [BR:
kga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ST1E_0861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AGF49193
UniProt:
M1L9H0
LinkDB
All DBs
Position
538852..542313
Genome browser
AA seq
1153 aa
AA seq
DB search
MNFLNKSCISTLTKNLLQKLKKGSKYSYERPFGSGTPMLISNIAVNSKKLTIIFTSSFLE
AKQISSDIKVFSPDLRVATMPDWEILPYDEFSPNNIIISDRIKILYDLLNNNIDVLTISI
TTSLHKISPPEFIASYSFHFNKNDVINEQNLKKQLEIANYKHVTQVRNFAEFCIRGNIID
LFPMGSLTPYRIDLYDDTIESIRSFDPETQCSTGFVEKIEILPVKEFPLDDKAKKLFRAK
FREYFDGDPSKYLIYKEIGKGYIFPGIEYYLPLFLEETATIFEYLPDDSICITTDNADEV
ISKYHSEINERYNFLKHDIERPVLSPDNLFLTKELFHKKAKAFKQLSLKLSNNNYFTNVE
SINNPTLQINSLDKIIEIMNSNSEWKILIFINSEKRIDILQNMINSYTKFTASYPSSVQE
FINNDEKCGIISAQINTGFKFIPSNLIFITENSFRSDNYNSHTTKLDSKKPHNIDTVVKD
ISDMSIGDPIVHNQHGIGRYNGLIHMQTNGTEMEFLQIEYANKASLYVPISHMHVISKYI
GTDAESAPLHQLGSDQWEKKYKKAIKQIHDTATELLDLYTQRSSNKHGFSFKILEDEYIR
FSDEFGFEETNDQTNAINDVINDMTSEKSMDRLICGDVGFGKTEIALRAAFIAVSNNKQV
SILCPTTLLSEQHTQTFINRFDNWPIRIAELSRFKTKKEILQNIYDINNGNIDIVIGTHK
ILSKDVKFKNLGLIIIDEEHRFGVRQKELLRKIKPNVDVLTLSATPIPRTLGMSLEGIRD
FSIIATAPKKRLPIKTFVRKHNKNIVREAITREFRRGGQIYYLHNEVNTIENKRQYIEDI
IPEAKIAIAHGQMHERDLESVMKAFYKGQYDILLCTTIIETGIDIPNANTIIIDNANNFG
LAQLHQLRGRVGRSHHQAYAYLLIQDEEFITNQAKKRLDAIQAMEDLGSGFYLAMHDLEI
RGAGEILGESQSGNNIHEIGYSMYNEILKNSIEAIKNGVDCKTTNKNSQYCEVNIHEAAL
LPNKYCSDIPSRLEIYKRLSLASCIDDLIIIKNELIDRFGKLPIQTENLILIHKIRITAQ
FSNIDEIDMSDKKIIIKFNEKSNINPIKLVEIYKNSKELKFQQNNKISINLSIPNIRDRT
NEVLKILKCINQN
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaattttttaaataaatcatgcatatctaccttaactaaaaatttattacaaaagctg
aagaaaggcagtaaatattcttatgaaagaccatttggttctgggacacctatgttaata
tctaatatagcggttaacagcaaaaaattaactataatatttacaagcagttttctagaa
gcaaaacaaatatcatctgatataaaagtattttccccagatttacgtgtagctacaatg
cctgattgggaaatattgccttatgatgaattctcaccaaataatataataatatctgat
aggataaaaatcctatatgacttattaaataataatattgatgtattaactatatctatt
acaacttctttacacaagatctctccaccagaatttatagcttcatacagttttcatttt
aataagaatgatgtaataaatgaacaaaacttaaaaaaacaattagaaatagcaaactat
aaacatgttactcaagtaagaaattttgcagaattttgtataagaggaaatattatagat
ctttttcctatgggatctctaactccatatagaattgatttgtatgatgatactatagaa
tcaataagatcattcgatcctgaaacacaatgtagcactggattcgttgaaaaaatagaa
attttaccagtgaaagaatttccactggatgataaagcaaaaaaactatttagagctaaa
tttagagaatattttgatggtgatccatcaaaatatttaatatataaagaaataggaaaa
ggatatatatttccaggtatagaatattatctacctttatttttagaagaaacagcaact
atttttgaatatctaccagatgacagcatatgtataacaacagataatgcagatgaagtt
ataagtaaatatcattcagaaataaacgaaaggtacaactttttaaaacatgatatagag
agacctgtactttctccagataatcttttcttaactaaagaattgtttcataaaaaggct
aaggcttttaaacaattatcactaaaattatcaaataacaattattttacaaatgtggaa
agcataaataatcctactttgcagataaactcactagataaaataattgaaattatgaat
tctaatagtgaatggaaaatacttatatttataaattcagagaaaagaattgacatattg
caaaatatgattaattcatatactaaatttacagcaagttatccatcttcagttcaggaa
tttattaacaatgatgaaaaatgtggaataatatccgcacaaataaatacaggttttaag
tttataccaagtaatttaatttttattactgaaaatagttttcgtagtgataactataat
agccatacaacaaaactagatagtaaaaaaccacacaatatagatactgtggtgaaagat
atttcagatatgagtataggagatcctattgtacataaccaacatggtataggaagatac
aatggtttaatacatatgcaaactaatggcactgaaatggaatttttgcaaatagaatat
gctaataaagcatctttgtatgtgcctatttctcatatgcatgttatttctaagtatata
ggaactgatgcggaatcagcaccattacatcaactaggatctgaccaatgggaaaaaaaa
tataaaaaagctataaaacaaattcatgatacagctactgaactactagatttatataca
caacgcagcagtaataagcatggatttagttttaagattctggaagatgaatatataaga
ttctcagatgaatttggttttgaagaaactaatgatcaaacaaatgctattaatgacgtg
ataaatgatatgacatctgaaaaatcaatggacagattaatatgtggggatgttggtttt
ggtaaaacagagatagcattaagagctgcatttattgcagtatccaacaacaaacaagta
tctattttatgcccaacaacgttactttcagagcaacatactcagacgtttataaataga
tttgataattggcctattcgtatagcagaattatctagatttaaaacaaaaaaagaaatt
ttgcaaaatatttacgatataaataatggcaatatagatatagttataggaacgcataaa
attttatctaaagatgtaaaatttaaaaatctaggacttattataatagatgaagaacat
agatttggcgtaagacaaaaagaattattaagaaaaataaaaccaaatgttgatgtacta
acattaagcgcgacaccgattccaagaacactaggaatgtctctagaaggaattagagat
ttttctataatagcaacagctcctaaaaaaaggttgcctataaaaacattcgtacgtaaa
cataataaaaatattgtaagagaagccataacaagagaatttagacgtgggggacaaata
tattatctgcataatgaggtaaatactattgaaaacaaaagacaatatatagaagatata
attccagaagcaaaaatcgcaatagcacatggtcaaatgcacgagagagatcttgaaagt
gttatgaaggcattttacaagggtcaatacgatatattgttatgtacgacaattatagaa
acaggtatagatattccaaacgcaaatactataattatcgataatgcaaataattttggt
ttagcccaattacatcagcttagaggtagggttggtaggtcacatcatcaagcctatgct
tatttattaatccaagatgaagaattcattactaatcaagcaaagaaaagattagatgca
atacaagcaatggaagaccttggatctggattttatttagccatgcatgatttggaaata
agaggagcaggagaaatattaggagagtctcaatctggtaataatatacatgaaattggc
tattctatgtataatgaaatactaaaaaactctattgaagccataaagaatggagttgat
tgtaaaactactaacaaaaactcacaatattgcgaagttaatatacatgaagcagcacta
ttgccaaataaatactgttctgatattccatcaagattagaaatttacaaacgcttatcc
cttgcatcttgcatagatgatttaataattattaaaaacgaactaatagatagatttggg
aaattacctatacaaacagagaatctcattttaattcataagattagaataactgctcaa
ttctcaaatatagatgagattgatatgtcagataaaaaaataataattaaatttaatgag
aaatctaacatcaatccaattaagttagtagaaatatacaagaattcaaaagaacttaaa
tttcaacaaaacaacaaaatatctataaatttaagcataccaaatataagagacagaaca
aatgaagtattaaaaatacttaaatgtataaatcaaaattaa
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